Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01360 ATGCATCTCATTTATTTTGATGGGTGGTTTTCTGTTCTTCAAGCTCAGCATAACATGCAAAAGCTGAGGGAAGGTGCACAAGTTCAAGTTCTAGAGTCTGATCACATCATCATTTGTGGTGTCAATAGTCATTTGGCTTTTATACTGAAGCAGCTAAATAAGTACCACGAATTTTCTGTCCGCTTAGGTACTGCGTCTGCTAGGAGACAGAGAATTCTTCTCATGTCTGATCTTCCAAGGAAACAAATGGACAAGTTAGCTGATAATCTTGCCAAAGATCTTTACCACATTGATGTTCTTACCAAGAGGTATGAAGTTGATACAGATGCATTTCTCTCTGTTCTTGCCCTTCAACCCATTGCAAATATGGAGTCCATCCCAACTATTGTTGAGGTTTCTAGTTCCAATACCTGTGACCTCTTAAAGTCGGTCACAGGACTGAAAGTAGAACCGGTGGAGAATGTTGCCTCTAAATTATTTGTCCAGTGTTCTCGGCAAAAGGAGCTCATCAAAATTTACAGACACTTGTTGAACTATCGAAAAAACGTATTTAATCTATTCAGCTCCCCTAATTTTGTTGGTCTAAATTATAAAGAACTTCGCCAAGGATTTCATGAGGCAGTTATTTGTGGTATCTATAGAAATGGGAAGATACACTTTCATCCAAATGATGATGAGATTCTGCAGCAAAATGACAAGGTGCTGTTCATTGCACCTCTCCTTGGAGGACATAAGGGAGGAGGTGGTCATTCAAATGTTACTAAGGAAGGAAGTAATACCATTAAAAAGCTGGAAAGTATTAAAAATAGTAATCCTTTAGACAAGACTATAGGACCAAAAGAATGCATACTTTTGCTAGGTTGGCGCCCAGATGTTGTAGACATGATCCAAGAATATGACAAGTATCTTGGACCTGGTAGTGTATTGGAAATCTTATCAGATGCACCATTTGATGAAAGAAAAAGAGCTTACAAAGCTGTGGACTGTAACAAGTTCAAAAATGTCAGAGTTTCTCACAGGATAGGAAACCCTATGGACTATGCTACCTTAGAGGAAACCCTACTAAATATTAGAAGTTCTTTCAATAAAAGTGAGGATGTTCCGTTGTCCATCGCTGTGATATCCGACAGGGAATGGCTTCTTGGGGATCCATCTAGGGCTGACAAACACTCAGTATATACTCTTCTCCTTGCTGAAAGTATCTGTCAGAAACATGGAGTCAAGGTTCAAAATCTTGCTGCAGAGATTGTTGACTCCAAATTGGGGAAACAAGTAACAAGAATAAAACCTTCCCTGACGTACATAGCAGCAGAGGAAATAATGAGTCTTGTCACAGCTCAAGTGGCAGAGGATAGTGAACTAAATGAAGATATCAGCGGCTACATGAAACAAGGGGAGGATCTCTCATTTTCAGAACTTGCTGAAAGAGCACATCTAAAGCAAGAAGTAGCCATTGGCTATATTAAAAATAATAGACAGGTAATCAATCCAATTCCTAAGTCTGAACCGATCTCTCTTGAATTAACTGATTCGTTAATTGTTATATCGGAGCGCGAATGA 1560 39.29 MHLIYFDGWFSVLQAQHNMQKLREGAQVQVLESDHIIICGVNSHLAFILKQLNKYHEFSVRLGTASARRQRILLMSDLPRKQMDKLADNLAKDLYHIDVLTKRYEVDTDAFLSVLALQPIANMESIPTIVEVSSSNTCDLLKSVTGLKVEPVENVASKLFVQCSRQKELIKIYRHLLNYRKNVFNLFSSPNFVGLNYKELRQGFHEAVICGIYRNGKIHFHPNDDEILQQNDKVLFIAPLLGGHKGGGGHSNVTKEGSNTIKKLESIKNSNPLDKTIGPKECILLLGWRPDVVDMIQEYDKYLGPGSVLEILSDAPFDERKRAYKAVDCNKFKNVRVSHRIGNPMDYATLEETLLNIRSSFNKSEDVPLSIAVISDREWLLGDPSRADKHSVYTLLLAESICQKHGVKVQNLAAEIVDSKLGKQVTRIKPSLTYIAAEEIMSLVTAQVAEDSELNEDISGYMKQGEDLSFSELAERAHLKQEVAIGYIKNNRQVINPIPKSEPISLELTDSLIVISERE 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10062306 10068522 - CmoCh06G013600.1 Cmo06g01360 384922

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01360 519 PANTHER ION CHANNEL POLLUX-LIKE 1-RELATED 103 271 - -
Cmo06g01360 519 PANTHER ION CHANNEL POLLUX-LIKE 1-RELATED 266 519 - -
Cmo06g01360 519 PANTHER ION CHANNEL POLLUX-LIKE 1-RELATED 14 102 - -
Cmo06g01360 519 SUPERFAMILY TrkA C-terminal domain-like 191 239 IPR036721 GO:0006813
Cmo06g01360 519 Gene3D - 183 240 IPR036721 GO:0006813
Cmo06g01360 519 PANTHER ION CHANNEL POLLUX-RELATED 103 271 IPR044849 GO:0006811
Cmo06g01360 519 PANTHER ION CHANNEL POLLUX-RELATED 266 519 IPR044849 GO:0006811
Cmo06g01360 519 PANTHER ION CHANNEL POLLUX-RELATED 14 102 IPR044849 GO:0006811
Cmo06g01360 519 Pfam Castor and Pollux, part of voltage-gated ion channel 153 240 IPR010420 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01360 - - - cpep:111785091 936.791
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01360 Cmo14g01808 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01960 Cmo-Chr4:10044790 Cmo06g01360 Cmo-Chr6:10062306 1.29E-29 dispersed
Cmo14g01808 Cmo-Chr14:13829972 Cmo06g01360 Cmo-Chr6:10062306 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g599 . . . . . . . . . . Cma06g01348 Cma14g01772 Car06g01169 Car14g01594 . Cpe08g00303 Cpe03g01483 . . . . . . . . . . . . . . . . Cone7ag0291 Cone4ag0286 Lsi05g01659 . . Cme06g00552 Blo02g00601 . . Bda13g00094 . . . . . Cmo06g01360 Cmo14g01808 . . . . . . . . . . . . . . . . . . . . . Csa03g01269 Chy06g00522 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010595 1 0 1 0 0 1 2 0 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 2 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01360 Cmo_Chr06 FPKM 3.056031 3.214421 0.396477 0.457798 0.0 0.096689 0.065562 1.237477 0.929893 0.888007