Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01375 ATGACAGAGAGCTCGGAGCAGCACCGTGTAATCAAACCCCACTTTCAGAACTCTGTTCAAAAAGCTCAAAAACCAATCCAAAATGGCAAAGGCCACCCGAATCTCGAACACCAAAGCACCAAAAACAGAGCCCGAAGAAGAAGCAGAGGCGGTCGGAAATCCGATCAGGGAGAAGTCTTTATGATGCCAAATTCTCGGCCCTGCACGGTGGCACGTAAACCTAACGCACCGGAGATTACCGCCGGAGCTTTAGTGGCGAGTACTAATCCAAATCCAAATGGTGCAAACAATTCAAGCAAGTCTGTGAGTTTTGCCCCACGACCTGGATTTGGGCAAGTTGGGACAAAGTGTGTAGTAAAAGCAAACCATTTCTTTGCAGAGTTACCCGACAAAGATTTGAATCAATATGATGTTACAATCACTCCAGAAGTGGCCTCAAGAACTGTGAACAGAGGCATTATGGCTGAATTGGTGAGATTATACAGAGAATCTGATCTGGGAAAGAGATTACCAGCTTATGATGGCAGAAAGAGTCTGTATACAGCTGGTGAGCTTCCTTTTGTATGGAGAGAGTTTAACATCAAGCTTGTGGATGAAGAAGATGGAGTCAGTGGTCCCAAGAGGGAGAGGGATTATAAAGTGGTCATTAAGTTCGTTGCAAGGGCAAATTTGCAGTATTTGGGTCAGTTCCTTGCCGGTAAGCGTGCCAATGCACCACAAGAAGCCATTCAAATACTGGACATTGTCTTGAGAGAGCTATCATCCAAAAGGTACTGTCCTATAGGAAGATCCTTCTTTTCTCCTGATATCAGATCACCTCAACGGCTCGGTGATGGCCTAGAATCATGGCGCGGTTTTTACCAGAGTATAAGGCCTACTCAAATGGGACTGTCTCTGAACATTGATATGGCTTCAGCTGCGTTCATCGAGCCTCTCCCTATCCTCGAGTTTGTTGCTCAGCTTCTCGGGAAAGATGTTTTGTCTCGGCCACTGTCTGATTCCGATCGCGTAAAGATCAAAAAGGCTCTTAGAGGGGTGAAAGTTGACGTAACGCACCGGGGTAATGTAAGGCGTAAGTATCGTATTTCGGGGCTAACGTCACAGCCTACAAGAGAACTAGTGTTTCCTGTTGACGACAACTCGACCATGAAGTCGGTTGTCGAGTACTTCCAGGAGATGTATGGCTTCACCATCCAACATGCTCATCTGCCTTGCCTCCAAGTAGGAAATCAGAAGAAGGCCAATTATTTACCAATGGAGGCCTGCAAAATTGTTGGGGGACAAAGGTATACAAAGAGATTGAATGAGAAACAAATAACTGCACTTCTGAAAGTCACATGTCAAAGACCGAGGGATCGAGAAAACGACATTCTAAAGACTGTTCAACACAATGCCTATAACAATGATCCTTATGCAAAGGAGTTTGGGATAAATGTTAGTGAAAAGATGACTTCTGTTGAAGCTAGAATTCTTCCTCCTCCATGGCTGAAATACCATGATACTGGAAAAGAGAAGGATTGCTTGCCTCAAGTGGGTCAATGGAATATGATGAATAAGAAAATGATTAATGGAATGACGGTTAGTCGGTGGGCGTGTATCAACTTCTCTAGGAGCGTGCAGGAGAGCGTTGCTCGTGGATTTTGTTCTGAACTTGCTCAAATGTGTCAAGTTTCTGGAATGGAATTCAATACAGAACCAGTTATTCCAATATACAATGCTAGGCCAGAACAAGTAGAGAAAGCTTTGAAGCATGTTTATCATGCTTCCATGAACAAGACTAAAGGAAAAGAGTTAGAGCTATTATTAGCTATCTTACCCGACAGTAACGGATCGCTTTACGGTGATATTAAGCGAATCTGTGAGACGGATCTTGGTTTAATATCACAATGCTGTCTTACAAAATATGTGTTCAAGATTAGTAAACAGTATCTTGCTAATGTTTCATTGAAGATCAATGTCAAGATGGGTGGTAGAAACACTGTTCTTCTAGATGCTATCAGCTGCAGGATACCGCTCGTAAGCGACATACCGACTATAATATTTGGAGCAGACGTGACTCATCCAGAGAACGGCGAAGATTCAAGCCCTTCGATAGCTGCTGTTGTAGCATCTCAGGATTGGCCTGAAGTGACAAAGTATGCTGGACTGGTGTGTGCTCAGGCTCATAGACAAGAACTTATACAAGACTTGTACAAAACTTGGCAGGATCCTGTCCGTGGCACCGTCAGCGGGGGCATGATCAGGGATCTTCTGGTTTCGTTTAGGAAAGCAACAGGGCAGAAGCCTCTAAGAATAATATTTTACAGGGATGGCGTTAGTGAAGGACAATTCTATCAAGTATTACTTTACGAGTTAGATGCAATCAGGAAGGCATGTGCTTCTTTAGAACTGAATTACCAGCCACCCGTGACGTTCATCGTCGTACAAAAACGACATCACACCCAACTGTTTGCCAACAACCATAGAGACAGAAGTAGCACAGACAGGAGTGGAAACATTTTACCTGGCACCGTAGTCGACTCCAAAATATGCCACCCGACAGAATTTGATTTCTATCTTTGTAGCCATGCTGGAATTCAGGGCACAAGCCGGCCAGCTCATTACCATGTTCTTTGGGATGAAAACAATTTTACAGCAGATGGGATTCAGTCCTTAACCAATAATCTTTGCTACACGTATGCAAGGTGTACGCGTTCGGTTTCGATCGTCCCTCCAGCATACTATGCACATTTAGCAGCATTCCGAGCTCGATTCTACATGGAACCAGAGATGCAAGAGAATGGCACGAGCGGTCGTTCTGCTAAGAGTGCGACCGGGGTTCGCCCTTTGCCAGCTCTAAAGGAAAATGTGAAGAGAGTAATGTTTTACTGTTAG 2874 44.4 MTESSEQHRVIKPHFQNSVQKAQKPIQNGKGHPNLEHQSTKNRARRRSRGGRKSDQGEVFMMPNSRPCTVARKPNAPEITAGALVASTNPNPNGANNSSKSVSFAPRPGFGQVGTKCVVKANHFFAELPDKDLNQYDVTITPEVASRTVNRGIMAELVRLYRESDLGKRLPAYDGRKSLYTAGELPFVWREFNIKLVDEEDGVSGPKRERDYKVVIKFVARANLQYLGQFLAGKRANAPQEAIQILDIVLRELSSKRYCPIGRSFFSPDIRSPQRLGDGLESWRGFYQSIRPTQMGLSLNIDMASAAFIEPLPILEFVAQLLGKDVLSRPLSDSDRVKIKKALRGVKVDVTHRGNVRRKYRISGLTSQPTRELVFPVDDNSTMKSVVEYFQEMYGFTIQHAHLPCLQVGNQKKANYLPMEACKIVGGQRYTKRLNEKQITALLKVTCQRPRDRENDILKTVQHNAYNNDPYAKEFGINVSEKMTSVEARILPPPWLKYHDTGKEKDCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQESVARGFCSELAQMCQVSGMEFNTEPVIPIYNARPEQVEKALKHVYHASMNKTKGKELELLLAILPDSNGSLYGDIKRICETDLGLISQCCLTKYVFKISKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWQDPVRGTVSGGMIRDLLVSFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLELNYQPPVTFIVVQKRHHTQLFANNHRDRSSTDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPEMQENGTSGRSAKSATGVRPLPALKENVKRVMFYC 957
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10120956 10129895 + CmoCh06G013750.1 Cmo06g01375 384937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01375 957 PANTHER PROTEIN ARGONAUTE 10 42 956 - -
Cmo06g01375 957 SUPERFAMILY Ribonuclease H-like 588 921 IPR012337 -
Cmo06g01375 957 SMART DUF1785_2 259 311 IPR014811 -
Cmo06g01375 957 Pfam Piwi domain 601 920 IPR003165 GO:0003676
Cmo06g01375 957 SMART PAZ_2_a_3 316 448 IPR003100 GO:0005515
Cmo06g01375 957 Pfam Mid domain of argonaute 509 586 IPR032473 -
Cmo06g01375 957 MobiDBLite consensus disorder prediction 1 70 - -
Cmo06g01375 957 Pfam Argonaute linker 1 domain 260 309 IPR014811 -
Cmo06g01375 957 CDD Piwi_ago-like 470 920 IPR045246 -
Cmo06g01375 957 Gene3D - 490 663 - -
Cmo06g01375 957 SUPERFAMILY PAZ domain 306 467 IPR036085 GO:0005515
Cmo06g01375 957 CDD PAZ_argonaute_like 311 425 - -
Cmo06g01375 957 SMART Piwi_a_2 600 921 IPR003165 GO:0003676
Cmo06g01375 957 Pfam N-terminal domain of argonaute 115 250 IPR032474 -
Cmo06g01375 957 MobiDBLite consensus disorder prediction 11 35 - -
Cmo06g01375 957 Pfam PAZ domain 338 442 IPR003100 GO:0005515
Cmo06g01375 957 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 42 956 - -
Cmo06g01375 957 Pfam Argonaute linker 2 domain 452 498 IPR032472 -
Cmo06g01375 957 ProSiteProfiles Piwi domain profile. 600 921 IPR003165 GO:0003676
Cmo06g01375 957 Gene3D paz domain 305 430 - -
Cmo06g01375 957 ProSiteProfiles PAZ domain profile. 312 426 IPR003100 GO:0005515
Cmo06g01375 957 Gene3D - 669 957 IPR036397 GO:0003676
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g01375 Cmo14g01794 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01762 Cmo-Chr4:8894242 Cmo06g01375 Cmo-Chr6:10120956 0 dispersed
Cmo06g01375 Cmo-Chr6:10120956 Cmo13g01159 Cmo-Chr13:9330678 0 dispersed
Cmo14g01794 Cmo-Chr14:13773102 Cmo06g01375 Cmo-Chr6:10120956 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01375 K11593 - csv:101221352 1805.03