Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01376 ATGCAGCTTCTTAACTCCGAAGAAACGGTCGCCGACTCGTCGGAAAGCGGCCTTGGGGAGGAAAGAAATTTGAAATCTTCTAACTTGGTTTCGTTTGAGGGTGATAGTGGAAACGAAACCGATGATTCGGTTATTGATGTATCGGGGAAAAACTTGGATTCTCACTTCTTGGAGGGTTCCCACAGCTCAGTGAAGGGTCTGTACATATTTCGGAATGCGTTCAATTTGATTCCGAAATCAGTTGGCAACTTTAGAGAATTGAGAATGCTGAAGTTCTTCGGGAACGAGATTAATTTGTTTCCGCCGGAGTTGAAGAACTTTTCGGGGTTAGAATGCTTGCAGGTGAAGTTATCATCACCGGGTTTTGGTGGTTTATCATTACACGAACTGAAGGATCTGAAGGAGCTCGAGCTATCGAAGATTCCTCCAAAACCTTCGTCGTTTCCAATTCTTAGTGAGATCGCTGGCCTTAAATGCTTGACTAAGCTCACTGTTTGTCACTTTTCTATTAGATTCCTTCCTCCTGAAATTGGCTGCCTGGATAGTTTGGAGTATCTAGATCTCTCATTTAATAAGATGAAGAGCCTTCCAGCAGAAATAGGCTATTTGAATGCCTTGATATCCTTGAGAGTTGCCAATAACAAGTTGGTGGAACTACCTCCAGCTTTGTCCTCCCTGCAAAAGTTGGAGAATTTGGATCTCTCAAGTAATAGGTTAACGTCATTGGGATCTCTTGAATTCGTATCTATGCATAGCCTTAAGAACTTAAATTTACAGTACAATAAGTTTCTAAGAAGCTGTCAGATACCCTCCTGGATATGCTGCAACTTTGAAGGAAATTGTGGAGACAAAATAGCTGATGAAGAATGTATTAGTTCTACAGTTGAAATGGATGTTTATGAAGCCACCATTCCAGACAATAGTGATAATTTTCCACATAAAGGTATTCGTAATCTCTCATCAAACCTATTAATGGGATCTTCAACAAACAGTAGATCATTTGCATCTCGAAAATCAGGTAAGCGATGGCGGAGACGACATTATTTACAGCAAAAAGCTCGCCAGGAGCGTTTGAATAATAGCAGGAAGTGGAAAGGAGTAGATCATCATACTGAAGTAAAGATCCATGAAAATCATGAACTTGGGAGGCTTGATACTGCTCCTACTTCTGAAACTACAGTTGAAGATTCATCAGTTATTGAGGAGTTATATGATAGTAAAGAGACCAGTCATGGAAAAGATGAAGGGGAAGATCTTATCAAGAACCATGAGAAGGACAATTTTGATGTCAAAAAGGAACTACCTGTGGAGGATTGCTCAGGTATCTGTATTGGTGCTGCAGGAAAAATGACAAGGGACGACAATGAATGTCATGAGCCCAGTGAGACTTTGCCGCTACCAGGAAATGAAGCACATGACCTAGAAGGGTCATCATCCCAAATATCAAAGGATAATGCTAAGTTGAAAAGATATTCTGAGAGGGAACTTGATAATCCTAAACCTTGCAAGTCAAGAAAGGCAGCTGAAGATAGCTCAAGTTTATCTTGCAAGTACAATAATATATCATTTTGCAGCGTTGAAGATTATGTACCAGATGGATTTTATGATGCAGGGCGTGATCGTCCCTTTATGTCATTAAGGAATTATGAGCAAAATTTTCATCTTGATTCTCGTGAAGTCATTCTTGTCAACAGGGAACATGATGAATTATTAGACTCTACAGTGATATCTGCGAAGTCATTGGTACTTCGTCTAAAGCAGATTAACCGAACCCAAGAAAGACATCAAGTTCTTGATGACATGCATATCATACAAGTACTTGCTCTATTTGTGTCTGATCATTTTGGAGGCAGTGATAGAAGTGCAATGGTTGAGAAAACACGGAAAGCTGTTTCTGGTTCCAAGTATCAGAAGCCTTTTGTCTGCACCTGCTCAACTGGAGATCGGAATAATCTTACTGCGTCCACTAAATTAACGGTGGATAATTATGAGGATATTCTTTTCACTGATATCTGTGAGAAATCTCTTCGTGCTATTAAAGCTAGTCGAAATTCCGTCATAGTTCCCCTTGGAGCTCTGAAATTTGGTGTGTGCAGGCATAGAGCGCTTCTTCTTAAGTATTTGTGTGACCGAATGGAGCCTCCAGTACCTTGTGAGCTTGTGAGAGGTTACTTGGATTTCTTGCCTCATGCCTGGAATGTGATCTTAGTGAAAAGAGGCAATGCTTTGGTTCGAATGGTTGTTGATGCATGTCGACCAAATGATATACGAGAAGAAGCAGATCCCGAGTATTTTTGCAGGTATATTCCTCTCAGTCGTGCAGAACTTCCTATTTCTTTCGGAATGTCACCCAGTCCAGGGTTTTCCTTCCCGTCTCTGTCCAACTGTGATGAGATTGAGAAGGCACCTTCTAGTTCTGTGTTAAAGTGCAAACTTGGGTCAGTTGAGGCTGCTGCAAAGTTACGGATGCTTGAAGTTTGTGAATCTTCATTTGATGAGATAAGGAACTTTGAATACAGTTGCTTAGGTGAAGTTAGAATACTGGGTGCTTTGAAACACTCCTGCATAGTACAGATGTATGGGCATCAGATATCTTCTGAATGGATTCCTTCTGAGGATGGAAAACCGAAGCGCCGGTTACTTAGATCTGCAATTTTTTTAGAGCACGTTAAAGGGGGATCTTTAAAGAGCTACTTGGACAAGTTGTACCAAGCTGGGAAAAAGCACATTCCAATGGATCTGGCATTGCATGTAGCTCGAGATGTTGCAAGTGCTTTGGTAGAGCTGCATTCAAAACACATCATTCATCGTGACATCAAAAGTGAAAATGTTTTGATAGATTTTGATGAAAATTCTGATGGAGTTCCCATGGTTAAGCTTTGTGATTTTGATAGAGCAGTGCCCCTTCGATCTTCCTTGCACACTTGTTGCATTGCCCATACTGGAATACCTCCTCCTGATGTTTGTGTTGGAACACCTCGATGGATGGCTCCAGAAGTTCTACGAGCAATGCATACACCAAATGTTTATGGACTGGAAGTGGATATTTGGTCATTTGGATGTCTGTTATTTGAACTGTTGACTTTTCAAATTCCGTACTTGGGGCTGACAGAATTGCAGATTTTCGATCAACTTCAGATGGGTAAACGACCAGAATTGATAGGAGAGCTTGAGGAGGAGGCACTGGGGTTGATAAAGGAAAGCGCAATGTCTCAATCTGTTCAAGAATCAGATGGTTCAGAGAAAGACCAAGAAACCAAAACATTCTTGATCGACTTGTTTTGCAAGTGTACTAAAAAAAATCCGAACGACCGACCAACAGCGGAAGAACTACACAAAATTCTGCTTGAGCACACAGCCAAAGTGAAATCTTTAGAAAAACTAGCCACATGA 3393 41.0 MQLLNSEETVADSSESGLGEERNLKSSNLVSFEGDSGNETDDSVIDVSGKNLDSHFLEGSHSSVKGLYIFRNAFNLIPKSVGNFRELRMLKFFGNEINLFPPELKNFSGLECLQVKLSSPGFGGLSLHELKDLKELELSKIPPKPSSFPILSEIAGLKCLTKLTVCHFSIRFLPPEIGCLDSLEYLDLSFNKMKSLPAEIGYLNALISLRVANNKLVELPPALSSLQKLENLDLSSNRLTSLGSLEFVSMHSLKNLNLQYNKFLRSCQIPSWICCNFEGNCGDKIADEECISSTVEMDVYEATIPDNSDNFPHKGIRNLSSNLLMGSSTNSRSFASRKSGKRWRRRHYLQQKARQERLNNSRKWKGVDHHTEVKIHENHELGRLDTAPTSETTVEDSSVIEELYDSKETSHGKDEGEDLIKNHEKDNFDVKKELPVEDCSGICIGAAGKMTRDDNECHEPSETLPLPGNEAHDLEGSSSQISKDNAKLKRYSERELDNPKPCKSRKAAEDSSSLSCKYNNISFCSVEDYVPDGFYDAGRDRPFMSLRNYEQNFHLDSREVILVNREHDELLDSTVISAKSLVLRLKQINRTQERHQVLDDMHIIQVLALFVSDHFGGSDRSAMVEKTRKAVSGSKYQKPFVCTCSTGDRNNLTASTKLTVDNYEDILFTDICEKSLRAIKASRNSVIVPLGALKFGVCRHRALLLKYLCDRMEPPVPCELVRGYLDFLPHAWNVILVKRGNALVRMVVDACRPNDIREEADPEYFCRYIPLSRAELPISFGMSPSPGFSFPSLSNCDEIEKAPSSSVLKCKLGSVEAAAKLRMLEVCESSFDEIRNFEYSCLGEVRILGALKHSCIVQMYGHQISSEWIPSEDGKPKRRLLRSAIFLEHVKGGSLKSYLDKLYQAGKKHIPMDLALHVARDVASALVELHSKHIIHRDIKSENVLIDFDENSDGVPMVKLCDFDRAVPLRSSLHTCCIAHTGIPPPDVCVGTPRWMAPEVLRAMHTPNVYGLEVDIWSFGCLLFELLTFQIPYLGLTELQIFDQLQMGKRPELIGELEEEALGLIKESAMSQSVQESDGSEKDQETKTFLIDLFCKCTKKNPNDRPTAEELHKILLEHTAKVKSLEKLAT 1130
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10134502 10142590 - CmoCh06G013760.1 Cmo06g01376 384938

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01376 1130 ProSiteProfiles Leucine-rich repeat profile. 228 249 IPR001611 GO:0005515
Cmo06g01376 1130 MobiDBLite consensus disorder prediction 1 37 - -
Cmo06g01376 1130 PANTHER BNAC08G43810D PROTEIN 65 1120 - -
Cmo06g01376 1130 Pfam Protein kinase domain 838 1112 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g01376 1130 ProSiteProfiles Leucine-rich repeat profile. 182 203 IPR001611 GO:0005515
Cmo06g01376 1130 SUPERFAMILY RNI-like 61 267 - -
Cmo06g01376 1130 SMART LRR_typ_2 203 225 IPR003591 -
Cmo06g01376 1130 SMART LRR_typ_2 180 201 IPR003591 -
Cmo06g01376 1130 SMART LRR_typ_2 226 249 IPR003591 -
Cmo06g01376 1130 MobiDBLite consensus disorder prediction 20 37 - -
Cmo06g01376 1130 SMART LRR_bac_2 226 245 - -
Cmo06g01376 1130 SMART LRR_bac_2 180 199 - -
Cmo06g01376 1130 SMART LRR_bac_2 203 222 - -
Cmo06g01376 1130 PANTHER SERINE/THREONINE-PROTEIN KINASE SBK1 65 1120 - -
Cmo06g01376 1130 ProSiteProfiles Protein kinase domain profile. 793 1115 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g01376 1130 MobiDBLite consensus disorder prediction 451 487 - -
Cmo06g01376 1130 Gene3D Ribonuclease Inhibitor 16 285 IPR032675 -
Cmo06g01376 1130 SUPERFAMILY Protein kinase-like (PK-like) 791 1115 IPR011009 -
Cmo06g01376 1130 Pfam Leucine rich repeat 206 263 IPR001611 GO:0005515
Cmo06g01376 1130 ProSitePatterns Serine/Threonine protein kinases active-site signature. 934 946 IPR008271 GO:0004672|GO:0006468
Cmo06g01376 1130 Pfam Ethylene-responsive protein kinase Le-CTR1 672 749 - -
Cmo06g01376 1130 SMART serkin_6 793 1116 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g01376 1130 PRINTS Leucine-rich repeat signature 183 196 - -
Cmo06g01376 1130 PRINTS Leucine-rich repeat signature 226 239 - -
Cmo06g01376 1130 SMART LRR_sd22_2 226 247 - -
Cmo06g01376 1130 SMART LRR_sd22_2 180 205 - -
Cmo06g01376 1130 Gene3D Transferase(Phosphotransferase) domain 1 791 1129 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01376 - - - csv:101218031 1909.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01376 Cmo-Chr6:10134502 Cmo04g02435 Cmo-Chr4:18073433 1.51E-21 dispersed
Cmo14g01791 Cmo-Chr14:13762756 Cmo06g01376 Cmo-Chr6:10134502 8.18E-13 transposed
Cmo14g01792 Cmo-Chr14:13763973 Cmo06g01376 Cmo-Chr6:10134502 5.82E-14 transposed
Cmo14g01790 Cmo-Chr14:13761602 Cmo06g01376 Cmo-Chr6:10134502 5.06E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g565 Blo01g00110 Blo12g00343 Bda03g00864 Bda08g00257 Bpe04g00813 . Bma04g00760 Bma05g01090 . . Cma06g01365 Cma14g01752 Car06g01180 Car14g01579 Sed12g0977 Cpe08g00290 . Bhi01g00754 Tan10g0783 Cmetu06g1325 . Hepe05g1592 . Lcy11g1588 . . . . . . . . . Cone7ag0282 Cone4ag0275 Lsi05g01644 . . Cme06g00569 . . . . Bpe05g00880 . . . . Cmo06g01376 . . . . . . . . . . . . . . Cla05g00503 Cam05g0554 Cec05g0566 Cco05g0564 Clacu05g0550 Cmu05g0522 Cre05g0591 . Csa03g01285 Chy06g00539 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008400 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 1 2 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74434 PF00069 Pkinase 4.00E-38 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01376 Cmo_Chr06 FPKM 3.496221 3.67527 0.0 0.0 0.18452 0.18097 0.260247 0.0 0.0 0.0
Cmo06g01376 Cmo_Chr00 FPKM 3.198553 3.354858 0.0 0.0 0.188342 0.169243 0.243383 0.0 0.0 0.0