Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01378 ATGTCTGTTGTTTTTCAGAATTTTGGTTATATCACTGGAAGCGATGTTCTGCTCAGGCTTCCCACCAACATGCGGGGAGGGAATGGAAAGGTTGCATACATCGACACTGAAGGCACTTTCCGACCTGATCGAATTGTGCCTATAGCTGAAAGATTTGGCATGGACCCGGGAGCTGTGCTAGATAATATCATATATGCTCGTGCCTACACCTACGAACATCAGCATAACCTCTTGCTCGGCCTTGCGGCAAAGATGTCTGAAGAACCGTTTAAACTTCTGGTGAGTCACCTGCAAAAACTGGCGCAGATGCTGTCCCGATTAACTAAAATTGCAGAAGAGTATAATGTAGCAGTTTACATGACTAACCAAGTGCTTAATCATCTCATTCAGGCAATCCATGACAGACATGTTAGCTCAATTTATGTTCAAAGTATTTTGACCTTGGTACTTCTTGTATTAGCTGGATTGACCGAGACTAAATCGTTTGCCGTTGAGTACACCAAACTGACCCAGGTGGAGGAGTGTTCGTATCAGACCCCAAAAAACCAGCAGGAGGCCACGTTCTTGCCCATGCTGCCACGGAAAGGCAAAGGAGAACAACGCATCTGTAAGGTGTTCGATGCTCCTAATCTGCCAGAGTCTGAAGCTATATCCTTAACTCACATCACGTCACACTTCAACACCTTCATTTATCATTTTCTGAACCACGTTTTTCAGATAACACCAGGGGGCATTGCAGATGCAAAGGATTGA 753 44.89 MSVVFQNFGYITGSDVLLRLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQHNLLLGLAAKMSEEPFKLLVSHLQKLAQMLSRLTKIAEEYNVAVYMTNQVLNHLIQAIHDRHVSSIYVQSILTLVLLVLAGLTETKSFAVEYTKLTQVEECSYQTPKNQQEATFLPMLPRKGKGEQRICKVFDAPNLPESEAISLTHITSHFNTFIYHFLNHVFQITPGGIADAKD 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10144924 10147442 + CmoCh06G013780.1 Cmo06g01378 384940

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01378 250 Pfam Rad51 16 94 IPR013632 -
Cmo06g01378 250 Pfam Rad51 98 217 IPR013632 -
Cmo06g01378 250 PANTHER RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER 190 220 - -
Cmo06g01378 250 Gene3D - 16 250 IPR027417 -
Cmo06g01378 250 PANTHER MEIOTIC RECOMBINATION PROTEIN DMC1-LIKE PROTEIN 190 220 - -
Cmo06g01378 250 PANTHER MEIOTIC RECOMBINATION PROTEIN DMC1-LIKE PROTEIN 18 126 - -
Cmo06g01378 250 PANTHER RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER 18 126 - -
Cmo06g01378 250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 20 215 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01378 K10872 DMC1; meiotic recombination protein DMC1 - aof:109835295 209.149
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01378 Cmo14g01788 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00824 Cmo-Chr10:3859596 Cmo06g01378 Cmo-Chr6:10144924 1.22E-30 transposed
Cmo14g01788 Cmo-Chr14:13759012 Cmo06g01378 Cmo-Chr6:10144924 2.92E-13 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g564 . . . . . Bpe14g01213 . . . . Cma06g01366 Cma14g01751 Car06g01181 . Sed12g0976 Cpe08g00289 Cpe03g01470 Bhi01g00755 Tan10g0784 Cmetu06g1587 . Hepe05g1591 . . . . . . . . . . . . Cone4ag0274 Lsi05g01643 . . Cme06g00570 . Blo07g00234 Bda11g00600 . . . Bma02g00822 Bma06g01573 . Cmo06g01378 Cmo14g01788 . . . . . . . . . . . . . Cla05g00504 Cam05g0555 Cec05g0567 Cco05g0565 Clacu05g0551 Cmu05g0523 Cre05g0592 . Csa03g01286 Chy06g00540 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010242 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01378 Cmo_Chr06 FPKM 1.03937 2.215241 9.546314 10.443304 0.475399 0.196796 0.138479 0.0 0.052946 0.055782