Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01389 ATGGGTAACGCAGATTTTGAGTGCCCTCACCGAGTCGCCATTCCACCAACCAAGCCATTCTTCGAGTCCTTAAGCTCCAACCTCAAAGAAACCTTCTTCCCCGACGACCCTTTCAAACAGTTCAAAAACCAGCCTTTAGGACCCCAAATTCTCCTCTGGCTTAAGTACTTCATCCCCATATTCGAATGGGCTCCTCATTACACCCTCGACTTCTTCAAATCCGACCTCGTGTCCGGTGTCACCATCGCCAGTTTAGCCGTCCCTCAGGGCATCAGCTACGCCAGCTTGGCTAGCATCCCTCCCATCATCGGACTCTATTCGAGCTTTATTCCTCCGTTGATATACGCCATGCTTGGTAGTTCGAAAGACGTGGCAGTCGGGACAGTAGCAGTAGCGTCGTTGCTCATGGCTGCCATAATGGGGAAGGAAGTCAGCCCCGTCGAACATCCGAAACAATACCTTCAGTTGGTTTTCACTGCCACGTTCTTCGCCGGAGTTTTTCAAGCTTCGCTCGGTTTTCTCAGGTTTGAAAAGTGCAGGCTGGGGCTTATTGTTGACTTTTTGTCGCATGCAACAATAGTGGGGTTCATGGGTGGTGCAGCAACCGTTGTTTGTCTTCAGCAGCTAAAAGGAATATTAGGATTGGTTCATTTCACGCACGAGACCGATATTGTATCCGTTATAACCTCTGTTTCCTCTCAAGTTCATCAGTGGAGATGGGAAAGTATTGTGTTGGGCTGCTGCTTTCTCTTCTTTCTCCTCCTCACCCGATACCTCAGCAAGAAGAAACCGATCTTCTTTTGGATAAATGCATTGGCGCCTTTGACGTCGGTCATCTTGGGGAGCCTTCTCGTCTACTTCACCCACGCTGAAAAGCATGGAGTTCAAGTGGTAACTTATCGAATCGCCATTTCCGTTGCTATTGGGCATTTGAAGAAAGGGTTGAATCCACCATCTGCGACTGATTTAGCATTTGGATCTCCTCATCTTTTAATTGCCATCAAAACAGGGATCATCGTCGGAATCATTGGCCTTGCTGAAGGAGTAGCAGTGGGGAGAAGTTTTGCTGCATTTAAGAATTACCACACTGATGGCAACAAGGAGATGATAGCATTTGGGATCATGAACATTGTTGGTTCCTGCACTTCTTGCTACCTGACTTCCGGGCCATTTTCGAGGAGTGCTGTGAACTTCAATGCAGGGTGTAAAACTGCAGTCTCCAATATTGTCATGTCAATAGCTGTGATGATCACTCTGTTGTTTTTGACGCCATTTTTTCATTACACACCCCTGGTGGTGCTCGCCTCCATAATCATCACTGCTATGATTGGCCTAATCAACTATGAAGAAGTCATCCACCTTTGGAAACTCGACAAATTTGACTTTGTCGTCTGCCTCGGTGCATACATCGGTGTCGTCTTTGGCAGTGTTGAAATGGGCTTGATCATTGCGGTTGCACTTTCTGTGTTGAGGGTGCTTCTCATGATCGCAAGGCCAAGAACTTTAGTATTAGGTAACATTCCCAACTCCACAATTTACAGAAGCATCGATCAATACCCAACAGCTGAGCATGTGCCTGGAATTCTCATCCTTCAATTGGAAGCACCAATCTATTTTGCTAACTCAAACTACCTGAGAGAAAGGCTTTCAAGGTGGATTACTGACGAAGAAGAGAGGATAAAATCATCAGGAGAAACCAGCTTGCAGTACATAATTCTGGACCTTTCCGGCGTGAGTAGCATTGATTCAAGTGGGATCAGCATGCTTAAAGAGATTAAGAAGAGTATTGAAAGAAAGGGGTTCAAACTTGTTCTTGCAAACCCGAAAAGTGAGGTGATAAAAAAGCTAAACAAGTCGAACTTCATCGAGGCGATCGGGCACGAATGGATCTATCTTACAGTGGGAGAGGCTGTAACGGCCTGCAACTTCGTACTCCAAACATGGAAGCCAAGTCCTGTTGCTGCTGCTGAATTAGATTCAGCTGTGAACAGTGTGTAA 1998 46.3 MGNADFECPHRVAIPPTKPFFESLSSNLKETFFPDDPFKQFKNQPLGPQILLWLKYFIPIFEWAPHYTLDFFKSDLVSGVTIASLAVPQGISYASLASIPPIIGLYSSFIPPLIYAMLGSSKDVAVGTVAVASLLMAAIMGKEVSPVEHPKQYLQLVFTATFFAGVFQASLGFLRFEKCRLGLIVDFLSHATIVGFMGGAATVVCLQQLKGILGLVHFTHETDIVSVITSVSSQVHQWRWESIVLGCCFLFFLLLTRYLSKKKPIFFWINALAPLTSVILGSLLVYFTHAEKHGVQVVTYRIAISVAIGHLKKGLNPPSATDLAFGSPHLLIAIKTGIIVGIIGLAEGVAVGRSFAAFKNYHTDGNKEMIAFGIMNIVGSCTSCYLTSGPFSRSAVNFNAGCKTAVSNIVMSIAVMITLLFLTPFFHYTPLVVLASIIITAMIGLINYEEVIHLWKLDKFDFVVCLGAYIGVVFGSVEMGLIIAVALSVLRVLLMIARPRTLVLGNIPNSTIYRSIDQYPTAEHVPGILILQLEAPIYFANSNYLRERLSRWITDEEERIKSSGETSLQYIILDLSGVSSIDSSGISMLKEIKKSIERKGFKLVLANPKSEVIKKLNKSNFIEAIGHEWIYLTVGEAVTACNFVLQTWKPSPVAAAELDSAVNSV 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10193827 10198489 + CmoCh06G013890.1 Cmo06g01389 384951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01389 665 TIGRFAM sulP: sulfate permease 59 637 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cmo06g01389 665 ProSitePatterns SLC26A transporters signature. 101 122 IPR018045 GO:0008271|GO:0008272
Cmo06g01389 665 CDD STAS_SulP_like_sulfate_transporter 519 634 - -
Cmo06g01389 665 ProSiteProfiles STAS domain profile. 518 641 IPR002645 -
Cmo06g01389 665 PANTHER SULFATE TRANSPORTER 4 660 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cmo06g01389 665 SUPERFAMILY SpoIIaa-like 520 641 IPR036513 -
Cmo06g01389 665 Gene3D STAS domain 498 643 IPR036513 -
Cmo06g01389 665 Pfam Sulfate permease family 72 466 IPR011547 GO:0016021
Cmo06g01389 665 PANTHER BNAA04G05880D PROTEIN 4 660 IPR030311 GO:0008272|GO:0009507|GO:0015116
Cmo06g01389 665 Pfam STAS domain 519 637 IPR002645 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01389 Cmo-Chr6:10193827 Cmo14g01779 Cmo-Chr14:13719051 0 dispersed
Cmo19g00288 Cmo-Chr19:2113518 Cmo06g01389 Cmo-Chr6:10193827 0 dispersed
Cmo17g01178 Cmo-Chr17:9479063 Cmo06g01389 Cmo-Chr6:10193827 0 wgd
Cmo06g01389 Cmo-Chr6:10193827 Cmo08g00320 Cmo-Chr8:1996246 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01389 K17471 - csv:101203205 1092.8