Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01390 ATGAAAACCTCAAACTCCCTCCTCCTCCTCCTCCTCTCTATTCTCATCCTCCCCAAACCTTCCCTTCAAGCATCTCCGCCGCCATCCCCATTTCTCCCCAACCAGAGACTCATCAAGGCCTACACAGCTCTCCAAGCATGGAAACATGCCATCACCGACGACCCGACCAACTTCACTGCCGACTGGTACGGCCCCAACGTCTGCAACTACTCCGGCGTCTTCTGTGCCCCTGCTCCCGACGACCCCGACATCCTCACCGTTGCCGGGGTTGACCTCAACAACGCCAACATCTCGGGAACCCTGCCCGACGATCTCGGCCTCCTGACCGACCTTGCCCTGTTCCACATCAATTCCAATCGCTTCTGCGGCACCGTCCCCAACTCCTTCCGTTTCCTCACTCTCCTCTTTGAGCTCGATCTCAGCAACAATGACTTCTCCGGCGAGTTCCCCTCTGTAATTCTCTCTCTCCCTTCCCTCAAATTCCTCGACGTTCGATTCAACAAATTCCACGGCGATCTCCCTTCTTCCCTGTTTGAAAAGAAACTCGATGCTCTGTTCATCAATAACAACGATTTCAAATTCTCACTGCCGGAGAACATCGGCAATTCCCCTGTTTCTGTGCTGGTTTTTGCTAATAACAACATCAATGGCTGCCTCCCCTCGAGTTTGTCAAATATGAACAATACACTCGAAGAAATTATAATCACAAATAGTGGGTTGATTGGGTGTTTGCCGCCGGAAATTGGGTCGCTGAGCAATCTCACCGTTTTCGATGTCAGTGACAACAATCTCGTTGGACCTTTGCCGGAGACAATGGCTGGAATGAAGAAATTGGAGCAGCTAAATATCGCACATAACCAATTATCCGGCGAGATACCGGCGAGTGTCTGCTTGTTGCCGACATTGCAGAACTTCACTTACTCGTATAATTTCTTCTGCAGTGAGCCGTCGATGTGCCTGAAGCTTCAGGCGAGTGATGACCGAAAAAATTGTTTGCCGGAAAGACCACTACAACGCTCGCCGGAGGAATGTAAAGCTCTGTACTCTTACCCTGTTGATTGCGGCGTCTTTGGCTGCACTCGACGGCCGCCACCGCCGCTTTAG 1104 51.54 MKTSNSLLLLLLSILILPKPSLQASPPPSPFLPNQRLIKAYTALQAWKHAITDDPTNFTADWYGPNVCNYSGVFCAPAPDDPDILTVAGVDLNNANISGTLPDDLGLLTDLALFHINSNRFCGTVPNSFRFLTLLFELDLSNNDFSGEFPSVILSLPSLKFLDVRFNKFHGDLPSSLFEKKLDALFINNNDFKFSLPENIGNSPVSVLVFANNNINGCLPSSLSNMNNTLEEIIITNSGLIGCLPPEIGSLSNLTVFDVSDNNLVGPLPETMAGMKKLEQLNIAHNQLSGEIPASVCLLPTLQNFTYSYNFFCSEPSMCLKLQASDDRKNCLPERPLQRSPEECKALYSYPVDCGVFGCTRRPPPPL 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10200801 10201904 + CmoCh06G013900.1 Cmo06g01390 384952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01390 367 SUPERFAMILY L domain-like 40 321 - -
Cmo06g01390 367 Pfam Leucine rich repeat N-terminal domain 42 75 IPR013210 -
Cmo06g01390 367 Pfam Leucine rich repeat 229 288 IPR001611 GO:0005515
Cmo06g01390 367 Gene3D Ribonuclease Inhibitor 39 202 IPR032675 -
Cmo06g01390 367 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 19 366 - -
Cmo06g01390 367 Gene3D Ribonuclease Inhibitor 203 325 IPR032675 -
Cmo06g01390 367 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 6 19 366 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g01390 Cmo14g01778 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01390 Cmo-Chr6:10200801 Cmo12g01271 Cmo-Chr12:11268328 1.12E-146 dispersed
Cmo14g01778 Cmo-Chr14:13715371 Cmo06g01390 Cmo-Chr6:10200801 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01390 - - cmos:111457817 647.121