Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01392 ATGGCGACGTTGTTGCATTCGGAATCTCGGCGCTTGTATTCTTGGTGGTGGGATAGCCATATCAGCCCCAAGAACTCAAAATGGCTACAGGAGAATCTTACAGATATGGATGCCAAAGTAAAAGCAATGATCAAACTCATTGAAGAAGATGCAGACTCCTTTGCAAGAAGAGCAGAAATGTACTACAAGAAACGTCCCGAGCTAATGAAATTAGTCGAGGAATTTTACCGAGCTTACCGTGCTTTAGCCGAAAGATATGACCATGCAACTGCAGAGCTTCGTCATGCACATAAAACCATGGCTCAAGCTTTTGACAACCAAATGCCTCCTTTTATGTTCTCTGATGAGTCAGCTTCAGGGTCTTCAAGTTCTGAAGCCGAAGTCCACACACCAGAAATCCACCTCCCGAATCGTGCACTGCTCGATCGAGATGACTCGCACAAGGATTCGGCATGTTCATCATCAACAAACCAACATCCATTAAGAACAAAAGGAGACAATGAGCTAGAAAATTTAGAGGTTAGTGAAGGAGGAAGCATCAAACCACAACTAGTTTTTTCTGAAGGGGAATTGGATGACCATAGGTTGCAAAACGTATCCTCTCAGTTATCAAGTAAAGCTTATGATCTCGAATCGCATGAGCTGGTTGAGTCGGGAAGTGACGAGAAATTGGACGTCGAACTTCAAAACTTAAGAAAGAGACTCAATCAGATGGAAGCTGAAAAGGAAACTTTCTTTCTTAAATACCAGAATTCTTTGGAAAAGTTATCTAGCTTAGAGAAAGAACTTAGTTCTGCTCAGAAAGATGCCGGTCGACTAGACGAACGAGCGAGCAAAGCCGAAATCGAAATAAAAATATTGAAGGAAGCCCTTATAGATCTGAAAGCAGAGAAGAATGCTGGTCTTCTACAATATAATCAATGTTTGCAAAAGATATCTAGCCTAGAAAAGCGATTATTTGTAGCCCAACAAGATGCTGAAGCACATAATGAGAGAGTTGCCAAGGCAGAAATTGAGGCGCAGAACTTTGAGCAACAGCTTTCCAGATTAGCAGCTGAAAAGGAGGCCAGTCTTCTTCAGTATGAACAATGCCTAAAGAAGATATCTGCTTTGGAGAAGAAAATCTCTCTTTCTGAAGATTATGCAAGAATGCTTGATGAACAAATGAGTAGCTCAGAGACTGAAGTCAAAGCACTTAAGAGAGCTCTTAATGAACTGAATGAAGAGAAGGAAATAGCATCCCGCCAGTATGAGCAGTGCTTGGAGAAGATTGCGAAAATGGAAGCTGTAATATCTTGTGCTCAAGACGACGCAAAACGTCTGAAAGGTGAGCTTATGATGGCTAAAGCAAAACTCGAGACAACCGAAGAAAGGTGTGCTCGTTTTGAGCAATCAAACCATTCACTGCAGTTTGATGCAGACAAACTTGTGCAGAAGATTGCTATTAAGGATCAAGAGCTTGCAGAAAAGCTAGATGAGTTGAAGAAAGTTCAGAGTCTAATGAACGACGAGCAGTCGCGATTCGTACAAGTTGAAAACACTCTCCACACTCTGCAGAATTTGCATTGTCAATCTCAGGAGGAGCAGAGAGCTCTGACTTTGGAGCTAAAAAATGGTCTCATGATGTTGAAGGATTTGGATATATGCAAACATGGTATGGAGGAAGAGCTTCAACGAGTTAAGGACGAAAACAAAATGCTGAATGAACTACATTTTTCTTCTGATACTTCAATGAAGAATTTAGAGGACCAATTATCTAGCTTGAAGGAGATGAAGGACAAACTTGAAGAAGTTGTTGCACAAAAAGAAGATCAGAGCAACTTGCTTGAGAAAGAGATCCTTCATTTGAGAGAAGAAATTAAGGGCTTAAGCGGAAGATACCACGGCATAACGAGACAATTGGAGGCAGTAGGATTGGATCCCGACTCGCTTGAATCGTCAGTGAGGGAATTTCAGGAGGAGAATGCCAAGCTGAGGGGGACATGTGAAAAGGACAGGAACAAGATGGAAGCACTTCATGAGAAGCTCAGTTATATGGATGAACTTTCAAAGGAAAATTCCATTCTCAAGGTATCTCTAGCTGAGCTGAATGCTGAATTGGAGAAAGCCAAGGAATCCCAGGAAGAAAAAAGTGCTGTTGTTGAAGAGAAATCTTCGTTGCTTTCACAGTTGCAGAATGTAACTGAGAATATTTTGAAACTTTTAGAGAGGAACACATTGCTAGAAGACTCCCTATCCGGTGCAAACAAAGAGCTTGAAGGTTTAAGAGCAAAATCAAAGGGCTTAGAAGAATTCTGCCAGTTATTGAAGGATGAGAAGTCAAATCTTCTGAATGAACGAGGGGTGTTGGTGGGTCGACTCGAAAACATCGAACCGAGACTAGGAAATCTCGAAAAGAGGTTTACAAATCTTGAAGAGAAGTATTCTGATCTTGAAAATGACAAAGACTCTGCCTTATATCAAATAGAAGAATTGAGATTTTCCCTTCTCATGGAAGAACAAGAGCATACAACTTACAAACAATCGACCGAGGCGAGACTTGCCGGTTTGGAAGACGATGTCCATGCCCTGCGAGAAGAAAGTAGAGTAGGCAAGGAAGAAATTGAGGAACTACTAGATAATGCTGTAAACGCCCAGGTCGAGATCTATATCTTGCAGAGGTTTGTTGAGGATATGGAAAAGAAAAATATTTCTTTACTCATTGAATGTGAACAATATGAAGAGGCATCCAAGTTATCAGATAAACTTATTGCTGATTTGGAAGGCGAAAATCTCGAGCAACAAGTCGAAGTAGAGTTTATGTACAACGAGATCGATAAACTAAGAGCTGGAATCCGAAAGGTATTAATGGCTCTTCGAATTGATCAAGATTATGTGCAGGGAAATATGAAAGAAGAGAGAATCCTGATAGTGGATATCTTGACCAGAATTGAGGACTTGAAAGCTTCTGTGTTCAAAAACAAGGACAAGAAGCAGCAACTGCTAGTTCAGAACTCAGTTTTATTAACTCTTCTCAAGCAACTGAGTTTAGAGAGTGAAGAACTTCTATTAGAGAAAGATAACATTATGCAGGAGTTAAAGATCATGAAGGGGCAGCTAGCAATGCATGAAAACGACAAGCACGAGCTTCTGAAGTCGAAAAACGAGTTGATGAAGCAAGTTAGCCAGTGGGAGCAACATGAGGTACTGCTGAAGGCCGAGATCGAAACTCTAAATGAGAAGCTAGTAAATCTTCAAGGGACTTGCCTTATGCTGGAAAAGGAAAATCATAATGTTGCTGAAGAAAAGAAATCTTTGCTCAAGAAATTTTTGGACCTTGAAGAAGACAAGAACATTATTCAACAAGAACAGCACGATTTAATCGTTCGGGAAGTGATTGCGTTCAATATCCTATCATCAATTTTTGAAAGCTTCAAAACCGAGAAATTCATGGAAACGGAAAAGCTCGTTCAAGATATTTGTCGTCTCCAAGTGGTGAATTCTGATACAAAGGAAGAAGTTGGAAAGTTAGCAGAGAAATTTCAGGTGAAGGAAGTGGAAAATTTGCATTTAAATGGTTCAGTAGAGAAATTGGCTAAGGAGCTTCATGAAGCAAAGGACATGAACGATCAACTTAGCTATCAAATTTTACTTGGAAGTGATGTTCTGAGGGTGACAGCCCAAGAGCTTTCTGAAACAGAAGAGAAGCTTAAAAATTCACATCTTGAACTGTCTGAAAAGTGCTCAAACCAGGAGAATGAGATTCAAAGCCTTTGTGAACTGAACGGAAACTTAAAATACGAAGTCAATTTATTGCACGACGAGATCGAGAAATGCAAAGTTAAAGAGGAATGTCTGAATTCAGAACTACAGGAGAAAAGAGATGAATTTGAGCTCTGGGAAGCAGAGGCCACGACGTTTTACTTCGATCTTCAAATCTCATTGATCCGGGAGGTCTTATACGAACATACAGTTCATGAACTTGCACAGGCTTGTGAAACTGCTGGGGATGAGAATGCTGCAAAAACTACAGAGATTGAACAACTCAGAGAAAGAGTAGGATCCCTGGAAACTGAAATTGGAGAGATGGAAGCACATATGTCTGCTTATAAGCCTGCCATAGCTTCTCTGAGACATGATGTAGAATCACTCAAGCATATTGTTCTTCCTCAAACTAGGGATATCTGTAAGGGTTCTGTAGGAGAAGAGGAGGAGGAAACCAAGATTCATGTTCATCACAGTAGCTGTTATGTCCACAAAGATGAGATATTGGATTTGCAGAAGATTGGGGCCGTGATAAAGGCAGTCGAGATGGCTGTGATCGAAGAAAAGGAAAAACTGAACAAAGAAGCTGCTGAAAAACGTGTCAAAAACTCGAAATCGGAAGGGAACTCGGTTCATAAAGCAACGAGTAAGGAAGGAAAAGGTTTGAGGGATGGAATTAGTGATAAAGTAAAGGCAAGAAAGAACAAACCTGAGAATGGAATATTGATGAAAGATATTCCATTGGATCATGTATCAGATAGTGCATTCCAGAGAAGAAGCAAAAGGGAATGTAGTGAGACCAGTGATCAAATGCTGAAGTTGTGGGAAACTGATGAACGAGAATGCGAGCAGAGTTTGATTGATAGCGTGCCACAAAGCCCGTCGGACGGGCAAGTCGAGTGCCCACAGTCAGAAATTGTAGAACATAAAAGTCCAGATTGTTCTTCAGAGCTGCAAGTAGAGAAGGAGTTGAGCGTTGATAGATTGGAGCTATCGCCTAGCATTAGAGAACGAATTCGACGAGGTCGAAAAGGAAAGGTTTTGGAGAGACTTGATTCAGATGTTGTTCAGTTGACAGGTCTTCTAACAAGCGTTCAGGATTTGAAAAAGAGAATGGAGGTGAACACGGTGGATATGGCTAGAAACAATGAATACGACACGGTCGAGAAACATTTAAAAGAAGTCGAGGAAGCGATCTTCCAGCAAGTAAATCTAAATGGTCAACTGAAGCAGAGTTTGGAACGCAGTCCATCGTGTTTCGAGCGAAGGTCATCGGTAGAAAGCGAGGCAACTGGAAACATGCCCCTAAACAAACTAACAGAGCAGGCACAAAGAGGATCAGAGAAGATAGGAAAACTACAGTTTGAAGTACAGAACATTCAGCGTGTTATTATGAAACTCGAATCCGAGAAAACGAGAAAAGGGAAGAACAGATTCTCGAAGAGCAAACCGGGTGTTATTCTGAGAGATTTCATCTACAGAAGCGGAAAATGCAGCAGCGAAAGACGGAAGAAGGCGTGTGCTTGTGGATGTACAAAACCTTCTACTCATGGAGACTGA 5304 41.08 MATLLHSESRRLYSWWWDSHISPKNSKWLQENLTDMDAKVKAMIKLIEEDADSFARRAEMYYKKRPELMKLVEEFYRAYRALAERYDHATAELRHAHKTMAQAFDNQMPPFMFSDESASGSSSSEAEVHTPEIHLPNRALLDRDDSHKDSACSSSTNQHPLRTKGDNELENLEVSEGGSIKPQLVFSEGELDDHRLQNVSSQLSSKAYDLESHELVESGSDEKLDVELQNLRKRLNQMEAEKETFFLKYQNSLEKLSSLEKELSSAQKDAGRLDERASKAEIEIKILKEALIDLKAEKNAGLLQYNQCLQKISSLEKRLFVAQQDAEAHNERVAKAEIEAQNFEQQLSRLAAEKEASLLQYEQCLKKISALEKKISLSEDYARMLDEQMSSSETEVKALKRALNELNEEKEIASRQYEQCLEKIAKMEAVISCAQDDAKRLKGELMMAKAKLETTEERCARFEQSNHSLQFDADKLVQKIAIKDQELAEKLDELKKVQSLMNDEQSRFVQVENTLHTLQNLHCQSQEEQRALTLELKNGLMMLKDLDICKHGMEEELQRVKDENKMLNELHFSSDTSMKNLEDQLSSLKEMKDKLEEVVAQKEDQSNLLEKEILHLREEIKGLSGRYHGITRQLEAVGLDPDSLESSVREFQEENAKLRGTCEKDRNKMEALHEKLSYMDELSKENSILKVSLAELNAELEKAKESQEEKSAVVEEKSSLLSQLQNVTENILKLLERNTLLEDSLSGANKELEGLRAKSKGLEEFCQLLKDEKSNLLNERGVLVGRLENIEPRLGNLEKRFTNLEEKYSDLENDKDSALYQIEELRFSLLMEEQEHTTYKQSTEARLAGLEDDVHALREESRVGKEEIEELLDNAVNAQVEIYILQRFVEDMEKKNISLLIECEQYEEASKLSDKLIADLEGENLEQQVEVEFMYNEIDKLRAGIRKVLMALRIDQDYVQGNMKEERILIVDILTRIEDLKASVFKNKDKKQQLLVQNSVLLTLLKQLSLESEELLLEKDNIMQELKIMKGQLAMHENDKHELLKSKNELMKQVSQWEQHEVLLKAEIETLNEKLVNLQGTCLMLEKENHNVAEEKKSLLKKFLDLEEDKNIIQQEQHDLIVREVIAFNILSSIFESFKTEKFMETEKLVQDICRLQVVNSDTKEEVGKLAEKFQVKEVENLHLNGSVEKLAKELHEAKDMNDQLSYQILLGSDVLRVTAQELSETEEKLKNSHLELSEKCSNQENEIQSLCELNGNLKYEVNLLHDEIEKCKVKEECLNSELQEKRDEFELWEAEATTFYFDLQISLIREVLYEHTVHELAQACETAGDENAAKTTEIEQLRERVGSLETEIGEMEAHMSAYKPAIASLRHDVESLKHIVLPQTRDICKGSVGEEEEETKIHVHHSSCYVHKDEILDLQKIGAVIKAVEMAVIEEKEKLNKEAAEKRVKNSKSEGNSVHKATSKEGKGLRDGISDKVKARKNKPENGILMKDIPLDHVSDSAFQRRSKRECSETSDQMLKLWETDERECEQSLIDSVPQSPSDGQVECPQSEIVEHKSPDCSSELQVEKELSVDRLELSPSIRERIRRGRKGKVLERLDSDVVQLTGLLTSVQDLKKRMEVNTVDMARNNEYDTVEKHLKEVEEAIFQQVNLNGQLKQSLERSPSCFERRSSVESEATGNMPLNKLTEQAQRGSEKIGKLQFEVQNIQRVIMKLESEKTRKGKNRFSKSKPGVILRDFIYRSGKCSSERRKKACACGCTKPSTHGD 1767
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10205433 10211475 - CmoCh06G013920.1 Cmo06g01392 384954

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01392 1767 Coils Coil 312 360 - -
Cmo06g01392 1767 Coils Coil 1698 1718 - -
Cmo06g01392 1767 PANTHER PROTEIN NETWORKED 4A 1 1234 - -
Cmo06g01392 1767 PANTHER PROTEIN NETWORKED 4A 1234 1767 - -
Cmo06g01392 1767 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 13 93 IPR011684 GO:0003779
Cmo06g01392 1767 MobiDBLite consensus disorder prediction 112 131 - -
Cmo06g01392 1767 SUPERFAMILY Tropomyosin 307 520 - -
Cmo06g01392 1767 Coils Coil 1220 1247 - -
Cmo06g01392 1767 Coils Coil 1269 1296 - -
Cmo06g01392 1767 MobiDBLite consensus disorder prediction 143 167 - -
Cmo06g01392 1767 PANTHER PROTEIN NETWORKED 1D ISOFORM X1 1 1234 - -
Cmo06g01392 1767 PANTHER PROTEIN NETWORKED 1D ISOFORM X1 1234 1767 - -
Cmo06g01392 1767 Coils Coil 1096 1116 - -
Cmo06g01392 1767 Coils Coil 487 507 - -
Cmo06g01392 1767 Coils Coil 543 570 - -
Cmo06g01392 1767 Coils Coil 840 874 - -
Cmo06g01392 1767 Coils Coil 578 619 - -
Cmo06g01392 1767 Coils Coil 221 297 - -
Cmo06g01392 1767 MobiDBLite consensus disorder prediction 1440 1486 - -
Cmo06g01392 1767 Coils Coil 787 821 - -
Cmo06g01392 1767 MobiDBLite consensus disorder prediction 112 128 - -
Cmo06g01392 1767 Coils Coil 1005 1088 - -
Cmo06g01392 1767 Coils Coil 648 668 - -
Cmo06g01392 1767 Coils Coil 1435 1457 - -
Cmo06g01392 1767 Pfam KIP1-like protein 14 87 IPR011684 GO:0003779
Cmo06g01392 1767 Coils Coil 1188 1208 - -
Cmo06g01392 1767 Coils Coil 724 758 - -
Cmo06g01392 1767 Coils Coil 889 909 - -
Cmo06g01392 1767 Coils Coil 1325 1359 - -
Cmo06g01392 1767 Coils Coil 679 717 - -
Cmo06g01392 1767 Coils Coil 382 465 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01392 - - - csv:101218746 2682.13
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01392 Cmo14g01776 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00795 Cmo-Chr1:4190745 Cmo06g01392 Cmo-Chr6:10205433 3.43E-12 dispersed
Cmo06g01392 Cmo-Chr6:10205433 Cmo16g00806 Cmo-Chr16:4146044 2.44E-37 dispersed
Cmo14g01776 Cmo-Chr14:13706983 Cmo06g01392 Cmo-Chr6:10205433 0 wgd
Cmo17g01177 Cmo-Chr17:9471163 Cmo06g01392 Cmo-Chr6:10205433 1.54E-80 wgd
Cmo19g00024 Cmo-Chr19:146320 Cmo06g01392 Cmo-Chr6:10205433 2.03E-43 wgd
Cmo02g01834 Cmo-Chr2:10393658 Cmo06g01392 Cmo-Chr6:10205433 2.28E-52 wgd
Cmo06g01392 Cmo-Chr6:10205433 Cmo08g00322 Cmo-Chr8:2004253 1.34E-71 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g541 . . . . . Bpe14g01206 . . . . Cma06g01386 Cma14g01737 Car06g01195 Car14g01566 Sed02g1335 Cpe08g00276 Cpe03g01456 Bhi01g00773 Tan10g0800 Cmetu06g0678 . . . . . . . . . . . . . . . Lsi05g01629 . . Cme06g00583 Blo02g00526 Blo07g00230 Bda11g00592 Bda13g00105 . Bpe13g00592 Bma02g00829 . . Cmo06g01392 Cmo14g01776 . . . . . . . . . . . . . Cla05g00517 Cam05g0568 Cec05g0580 Cco05g0578 Clacu05g0565 Cmu05g0536 Cre05g0605 . Csa03g01300 Chy06g00554 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003822 2 2 2 1 2 1 2 1 1 1 1 1 4 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01392 Cmo_Chr06 FPKM 0.303369 0.14847 0.35544 0.227431 0.467477 0.76258 0.564759 0.22611 0.089788 0.146452
Cmo06g01392 Cmo_Chr00 FPKM 0.400861 0.278653 0.489827 0.220708 0.502868 0.902775 0.697222 0.224672 0.229149 0.219231