Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01394 ATGGATACTCCGGAGAGGAAACAGATCGCCACTACTTCTGTCTCTAAATTTGAGGATTCCCCTGTCTTCAATTACATCAACAATCTATCACCGATCCAACCCGTAAAGTCTATACATACTACGCAGACATTCAACTCTCTTAGTTTTGCCTCCCTTCCGTCGGTTTTTACTTCACCACACGTTAGTTCATACAAGGAATCTAGATTCTTAAGAAGGCACAGTGTTGCAGATCTATCGAAACCGGACTTCGCTTCTGAAAATGGGAATAAAGTTGACACCAATGGAGGTGTTACTGGGAGTGTGTCTCAATTACAGGGGAACTCTAGTGCACCAGATGGTAACTCTGATTCAACCGAGCTTCCTTCTGTGCACTCATTGTCTACTAAAGAGGAGCCACAAGCTATGAAGAGTGATTCGGCTCGTCCAGACTGTGACCAAAAGCTACCAGATAGTGTTACAGAATCAGGTGAAGATCCAGCTTTAATTGAACCCTATGTTCACAACAAATCAGGAAATGGATCAGCTGAAGCTGAAGCGAATAAGCAAGTCGTAAGCCTCACTGAAGAAAGAGAGGCGACCGGTTATGATTGGGAAAGCTTAATTACTGAAGGCTCTGATCTTTTGATATTCAGCTCCCCCAACGGTTCAGAGGCTATCAGACTAGTTCAGAAACCATTAGACCTTGTGACAGGGTTTACTTCAAGTACCTTGTCTCAAATCATGGAAAACGACAATACCAATCTGTCGAAAATGAGAATTGCTGATCCAATAGAATCTAGTGGTGGACAGCAGGAAATTGAGTTTTTGTCATCTCAAGCTGGAGAGGCTCATGAGCTAAAAGATATGGACCGAGCAATAGATAGCCTTTCTTTTCCAAACTCAAGTAACTCTATGAGTAGGGAAATAACAGATGATGAGGTGGCTAGATATATTACCGATGATTGTAAGCCAGTGTCTAATTTGTATCGGGGTATGCGGAGGCGCTGTCTGGACTTCGAGGCAGCAGTCAGTCGAAGAAAAAACTTAGAAGATGGTTCAACTAGTGGTTCTGTGTCGACACATCCAGAAGAGAAGATGCCATCCGTCGATAAACAGCTAGTCCCTTATAAATCCGGTGGTGTTGCAACTCGATGCATTTTAACTGGAATAGGTTTACACTTAAATGCTTTGGCAACAGCGTCAAAGGATGCCAAAACTCTCAATCAAGAGAAGTTTTCGTCCGAGAGGCAGCTGAATTTGCCAAATTCGAGTGCTTCATGTCACTCTCCCTCAACTGGCCTGGATCCTCGCTTAACTTCGGTCGTTACCGAAAGGGATATGGACCCTTCAGAGAATGGGGTTCATAACGAGGAAGATGCTGTGAGGGCATCCGCTTATGTGCTTGCGGAGGACTTCAATCAAAATAGTCCCAAAAAGAAGAGGCGTCGGTTGGAACATGCTGGAGAAACTGAGTCGTCGTGCAAACGCTGTAATTGTAAAAAGTCGAAGTGTTTAAAACTTTACTGTGAATGCTTTGCTGCGGGTGTTTACTGTATCGAGCCATGCTCGTGTCAAGATTGCTTTAACAAACCTATACATGAAGATACCGTTCTTGCAACTCGCAAACAGATTGAATCTCGCAATCCACTTGCATTTGCTCCCAAAGTGATCAGGAACTCGGACTCTCTTCCTGAGCCAGGGGATGAATCTAACAAAACCCCGGCGTCTGCACGGCATAAAAGAGGATGCAATTGCAAGAAGTCAAGTTGCCTCAAGAAATACTGTGAATGCTATCAGGGCGGTGTTGGATGCTCCATCAGTTGCAGATGTGAGGGGTGTAAAAATGCATTTGGAAGAAAGGACGGGTCTTCTTTATTAGGATTAGAAACTGAACAAGAAGAAGAAGAACCAGAAACAAACCAAGCGAGTGCGATGGACGACAAAGCTTTGCACGGCCCTGAAATTCCGAATAATGAAGAACAGAACCCAGGTTCTGCAATTCCCTCAACACCATTACAGCACTGCAGGCAATTGGTTCCTCTACCCTTCTCCTCAAGGAGCAAACCGCTGCGTTCTTCATTTCTCAACGTCGGATCCTCGTCTGGATTTTACACTGGCAACAAGCTCGAAAAGCCGAACATTCTCCAATCTCAACCAGATCCAGGGAAAAATACTCTTCCTGGTATGGAAGATGAAATGCCCGATATTCTTTGTGGCAATTGCTCTCCTGGTGCAGGCGTGAAGACTGGCTCCCCCAACAGTAAGAGGATATCTCCTCCTCAGAGCGACTTCGGGTTATCGCCATTACCACGAACGGGCCGGAAGTTGATATTGCAGTCGATTCCTTCTTTCCCTTCTCTCACCCCTCAACACTGA 2355 45.05 MDTPERKQIATTSVSKFEDSPVFNYINNLSPIQPVKSIHTTQTFNSLSFASLPSVFTSPHVSSYKESRFLRRHSVADLSKPDFASENGNKVDTNGGVTGSVSQLQGNSSAPDGNSDSTELPSVHSLSTKEEPQAMKSDSARPDCDQKLPDSVTESGEDPALIEPYVHNKSGNGSAEAEANKQVVSLTEEREATGYDWESLITEGSDLLIFSSPNGSEAIRLVQKPLDLVTGFTSSTLSQIMENDNTNLSKMRIADPIESSGGQQEIEFLSSQAGEAHELKDMDRAIDSLSFPNSSNSMSREITDDEVARYITDDCKPVSNLYRGMRRRCLDFEAAVSRRKNLEDGSTSGSVSTHPEEKMPSVDKQLVPYKSGGVATRCILTGIGLHLNALATASKDAKTLNQEKFSSERQLNLPNSSASCHSPSTGLDPRLTSVVTERDMDPSENGVHNEEDAVRASAYVLAEDFNQNSPKKKRRRLEHAGETESSCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKPIHEDTVLATRKQIESRNPLAFAPKVIRNSDSLPEPGDESNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNAFGRKDGSSLLGLETEQEEEEPETNQASAMDDKALHGPEIPNNEEQNPGSAIPSTPLQHCRQLVPLPFSSRSKPLRSSFLNVGSSSGFYTGNKLEKPNILQSQPDPGKNTLPGMEDEMPDILCGNCSPGAGVKTGSPNSKRISPPQSDFGLSPLPRTGRKLILQSIPSFPSLTPQH 784
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10217110 10221488 - CmoCh06G013940.1 Cmo06g01394 384956

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01394 784 MobiDBLite consensus disorder prediction 340 360 - -
Cmo06g01394 784 MobiDBLite consensus disorder prediction 86 133 - -
Cmo06g01394 784 SMART CXC_2 571 612 IPR033467 -
Cmo06g01394 784 SMART CXC_2 485 526 IPR033467 -
Cmo06g01394 784 ProSiteProfiles CRC domain profile. 486 611 IPR005172 -
Cmo06g01394 784 MobiDBLite consensus disorder prediction 401 426 - -
Cmo06g01394 784 MobiDBLite consensus disorder prediction 704 764 - -
Cmo06g01394 784 MobiDBLite consensus disorder prediction 80 178 - -
Cmo06g01394 784 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 488 523 IPR005172 -
Cmo06g01394 784 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 574 609 IPR005172 -
Cmo06g01394 784 MobiDBLite consensus disorder prediction 134 152 - -
Cmo06g01394 784 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 784 - -
Cmo06g01394 784 MobiDBLite consensus disorder prediction 621 664 - -
Cmo06g01394 784 MobiDBLite consensus disorder prediction 739 754 - -
Cmo06g01394 784 MobiDBLite consensus disorder prediction 341 355 - -
Cmo06g01394 784 MobiDBLite consensus disorder prediction 548 575 - -
Cmo06g01394 784 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 784 IPR044522 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01394 - - - cmax:111473091 1502.65
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01394 Cmo14g01773 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01394 Cmo-Chr6:10217110 Cmo10g00669 Cmo-Chr10:3059747 1.06E-30 dispersed
Cmo14g01773 Cmo-Chr14:13699108 Cmo06g01394 Cmo-Chr6:10217110 0 wgd
Cmo17g00212 Cmo-Chr17:1245799 Cmo06g01394 Cmo-Chr6:10217110 3.18E-14 wgd
Cmo06g01394 Cmo-Chr6:10217110 Cmo08g01108 Cmo-Chr8:7086479 1.14E-13 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g539 . Blo12g00335 Bda03g00875 . . Bpe14g01204 Bma04g00774 . . . Cma06g01388 Cma14g01734 Car06g01197 Car14g01564 Sed02g1334 Cpe08g00275 Cpe03g01455 Bhi01g00774 Tan10g0801 Cmetu07g2311 . Hepe05g1577 . Lcy11g1571 . . . . . . . . Cone15ag0860 Cone7ag0270 Cone4ag0261 Lsi05g01627 . . Cme06g00586 Blo02g00527 Blo07g00229 Bda11g00591 Bda13g00106 . Bpe13g00593 . Bma06g01566 . Cmo06g01394 Cmo14g01773 . . . . . Cpe17g00155 . . . . . . . Cla05g00518 Cam05g0569 Cec05g0581 Cco05g0579 Clacu05g0566 Cmu05g0537 Cre05g0606 . Csa03g01301 Chy06g00555 Cme05g00473
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003693 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 7 1 2 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10021 PF03638 TCR 1.90E-11 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01394 Cmo_Chr06 FPKM 3.984225 4.772629 3.429163 2.952492 10.251737 9.825793 11.025258 0.307239 0.20373 0.280301
Cmo06g01394 Cmo_Chr00 FPKM 4.216349 4.628072 3.40845 2.83477 10.409907 10.881485 11.350131 0.356031 0.13771 0.247192