Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01395 ATGGATTCGAAAGGAAATGAGGATAAATCGCTGAACTCGAAGGATGCTAGTATTGGAAGCATTAGCAGCAAAGATATGATATTTAGAGCAGATAAGATCGATTTGAAAAACCTGGATATGCAGCTGGAAAAGCACTTGAGCCGTGTTTGGTCGAAGAGCGTTGGCGTTGAGACACAAAAGCCTAAGGAGGAGTGGGAGATTGATTTGTCTAAACTCGATATTCGATATGTCGTCGCTCACGGGACTTACGGGACGGTGTTCAGGGGTACATATGACAATCAAGATGTCGCTGTGAAGCTATTGGACTGGGGGGAGGATGGTCTTGCCACATCTGCTGAAACTGCTGCTTTGCGTGCATCGTTTCAGCAAGAGGTTGCTGTCTGGCATAAGCTTGATCATCCTAATGTTACAAAATTTGTTGGAGCTTCAATGGGAGCTACAAATCTTAAGATTCCTTCAAATGGCTCTTCGATGGATGGTCAAAATTCCCTTCCATCTAGAGCCTGCTGTGTTGTTGTTGAGTATCTTCCTGGTGGGACATTAAAACAATACTTGATAAGGAACAGGAAAAAGAAGCTTGCCTTTAAGGTTGTGATTCAAATAGCTTTGCATCTCTCCAGAGGGCTTAGCTATCTACACTCCAAGAAGATTGTACACCGTGATGTCAAAACTGAAAATATGTTGTTAGATAGTCAAAGAACTCTCAAAATTGCTGATTTTGGTGTTGCCCGTGTCGAGGCTCAGAATCCAAGAGACATGACTGGGGAAACTGGTACTCTTGGATACATGGCCCCAGAGGTATCTTTCATTCTGTTCTTATTATATGTTCTTGATGGGAAGCCGTACAATAGAAGATGTGATGTCTACAGCTTTGGCATCTGCTTATGGGAAATTTACTGTTGTGATATGCCATACCCCGATCTTAGTTTTGCTGATGTCTCATCTGCTGTTGTTCGACAGAACCTACGACCTGATATCCCAAAGTGCTGTCCTAGTTCTCTGGCTAATGTGATGAAGAAATGCTGGGATGGCAACCCATCCAAACGCCCTGAAATGGATGAGGTTGTCAAAATGTTGGAAGCCATTGATACAAGTAAAGGAGGTGGGATGGTGTCTGATGACCAAGTCTCTAGGTGCTTCTGTTTCGGTTCGCCCCGCGGTCCGTGA 1167 44.04 MDSKGNEDKSLNSKDASIGSISSKDMIFRADKIDLKNLDMQLEKHLSRVWSKSVGVETQKPKEEWEIDLSKLDIRYVVAHGTYGTVFRGTYDNQDVAVKLLDWGEDGLATSAETAALRASFQQEVAVWHKLDHPNVTKFVGASMGATNLKIPSNGSSMDGQNSLPSRACCVVVEYLPGGTLKQYLIRNRKKKLAFKVVIQIALHLSRGLSYLHSKKIVHRDVKTENMLLDSQRTLKIADFGVARVEAQNPRDMTGETGTLGYMAPEVSFILFLLYVLDGKPYNRRCDVYSFGICLWEIYCCDMPYPDLSFADVSSAVVRQNLRPDIPKCCPSSLANVMKKCWDGNPSKRPEMDEVVKMLEAIDTSKGGGMVSDDQVSRCFCFGSPRGP 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10228553 10232907 + CmoCh06G013950.1 Cmo06g01395 384957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01395 388 PRINTS Tyrosine kinase catalytic domain signature 173 186 IPR001245 GO:0004672|GO:0006468
Cmo06g01395 388 PRINTS Tyrosine kinase catalytic domain signature 211 229 IPR001245 GO:0004672|GO:0006468
Cmo06g01395 388 PRINTS Tyrosine kinase catalytic domain signature 330 352 IPR001245 GO:0004672|GO:0006468
Cmo06g01395 388 PRINTS Tyrosine kinase catalytic domain signature 286 308 IPR001245 GO:0004672|GO:0006468
Cmo06g01395 388 CDD STKc_MAP3K-like 78 359 - -
Cmo06g01395 388 Pfam Protein tyrosine and serine/threonine kinase 76 359 IPR001245 GO:0004672|GO:0006468
Cmo06g01395 388 PANTHER KINASE ATMRK1, PUTATIVE-RELATED 11 379 - -
Cmo06g01395 388 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 11 379 - -
Cmo06g01395 388 Gene3D Phosphorylase Kinase; domain 1 61 153 - -
Cmo06g01395 388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Cmo06g01395 388 SUPERFAMILY Protein kinase-like (PK-like) 51 359 IPR011009 -
Cmo06g01395 388 Gene3D Transferase(Phosphotransferase) domain 1 176 376 - -
Cmo06g01395 388 SMART serkin_6 72 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g01395 388 ProSiteProfiles Protein kinase domain profile. 72 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g01395 Cmo14g01771 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01395 Cmo-Chr6:10228553 Cmo11g01694 Cmo-Chr11:11996809 0 dispersed
Cmo14g00661 Cmo-Chr14:3358166 Cmo06g01395 Cmo-Chr6:10228553 3.17E-18 dispersed
Cmo14g01770 Cmo-Chr14:13686586 Cmo06g01395 Cmo-Chr6:10228553 2.65E-164 wgd
Cmo17g01175 Cmo-Chr17:9450541 Cmo06g01395 Cmo-Chr6:10228553 0 wgd
Cmo06g01395 Cmo-Chr6:10228553 Cmo08g00324 Cmo-Chr8:2028972 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74435 PF07714 PK_Tyr_Ser-Thr 2.00E-56 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01395 - - jre:108989477 649.818