Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01397 ATGAAGAGGCCAATGCCGTGGAATGAACAGGTAGATGTTATATCATCAGGTGAATCTTCTTCCTCTGATTCAGAAATAGGAGGACAAAACGATGGATTTGAGTTCAAGCCCTCTATTGACGACTTCAAAATTCCTGCAAAGGAGATGACATCTGAAGGCATGTTGATTAAAAGGGCAGAAATGTATCAAGAATACATGAAACAGATCCCGATCCCGGCACACCGTGGATCTGTTATACCGTTTAGAACATGGATGGGACTAGGCAAATCTATAAAGCAACTTTATGAACAGCCTTTGCATTACCTGACTAACATTCAGCTCAAACAGTGGGATCAATTAAGATTCGGAAGTGTGGATGAATATAAGCCATTGGATACCATAATTCATCCGAGTAAAGCTGAAGCAACCGTATGGCTGGTTGAAGAGATTCATCGGCGCACCTCGTCACATCATCATGTTGCTAAGCTCTGGTTATCGGACTCGATGCACGAAGTGTATGTTGACTCCATTTTCCCCCAACTATGA 525 42.48 MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLHYLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10236373 10237768 - CmoCh06G013970.1 Cmo06g01397 384959

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01397 174 SUPERFAMILY Hypothetical protein At3g22680 53 173 IPR036319 -
Cmo06g01397 174 PANTHER PROTEIN RDM1 1 174 IPR015270 GO:0005634|GO:0044030
Cmo06g01397 174 MobiDBLite consensus disorder prediction 12 28 - -
Cmo06g01397 174 Gene3D RDM1 protein domain 53 174 IPR036319 -
Cmo06g01397 174 PANTHER PROTEIN RDM1 1 174 - -
Cmo06g01397 174 MobiDBLite consensus disorder prediction 1 33 - -
Cmo06g01397 174 Pfam RNA-directed DNA methylation 1 55 173 IPR015270 GO:0005634|GO:0044030
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01397 - - - csv:101203937 317.775
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01397 Cmo14g01769 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g01769 Cmo-Chr14:13681923 Cmo06g01397 Cmo-Chr6:10236373 2.36E-108 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g535 . . . . . . . . . . Cma06g01392 Cma14g01730 Car06g01201 Car14g01561 Sed02g1328 Cpe08g00273 Cpe03g01452 Bhi01g00781 Tan10g0805 . . Hepe05g1574 . Lcy11g1568 . . . . . . . . . . . Lsi05g01624 . . Cme06g00590 . Blo07g00228 Bda11g00589 . . Bpe13g00596 . Bma06g01564 . Cmo06g01397 Cmo14g01769 . . . . . . . . . . . . . Cla05g00521 Cam05g0573 Cec05g0584 Cco05g0582 Clacu05g0570 Cmu05g0540 Cre05g0608 . Csa03g01304 Chy06g00558 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008191 1 1 1 1 1 1 2 1 1 1 1 1 2 1 0 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01397 Cmo_Chr06 FPKM 26.261204 23.903929 2.505676 2.48458 0.535604 0.619297 0.598865 0.223059 0.440951 0.292757
Cmo06g01397 Cmo_Chr00 FPKM 26.226727 24.188698 2.445236 2.431094 0.532209 0.543069 0.59602 0.222198 0.439402 0.283595
Cmo06g01397 Cmo_Chr00 FPKM 37.170673 39.049152 5.150487 7.078527 1.572953 1.370712 0.864007 0.858182 1.564238 0.99199