Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01400 ATGGCACAGGGAAAGATGGTGATGACTCTGCTTGCTGTTATCGTTGCCGTTCACTGGGCAGGAGCAGCGGCACAGTCGGACTGTACGAATGTGCTGATCAGCTTGTCACCGTGCCTGAATTACATTACAGGGAACTCTTCTACCCCATCACAAGGATGCTGCACACAGCTTGCAACCGTTGTCCGCTCACAACCACAGTGCTTGTGCCAGGTCCTGAATGGTGGTGGTTCCTCGCTTGGGGTCAACATCAACCAAACCCAGGCTCTGGCTCTGCCCCAGGCTTGCAATGTTCAGACTCCTTCCATCAGCAGCTGCAATGGTAAGCATTCAGTCATGTTTGCTTCTCCCACCGGCTCTCCAGCAGGATCACCGGAATCTTCAAACAATGTTCCTTCAGGAACTGGATCTAAGACTGTTCCATCACCAGACAACAACTCATCAGACGGAAGCTCCATCCATTTGTCAAAACCTCTACTATTCTCCATCTTGTTGGCTTCTACATATGCTTCAGCTTTCAAGTTGTACTGA 528 50.38 MAQGKMVMTLLAVIVAVHWAGAAAQSDCTNVLISLSPCLNYITGNSSTPSQGCCTQLATVVRSQPQCLCQVLNGGGSSLGVNINQTQALALPQACNVQTPSISSCNGKHSVMFASPTGSPAGSPESSNNVPSGTGSKTVPSPDNNSSDGSSIHLSKPLLFSILLASTYASAFKLY 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10257163 10258109 + CmoCh06G014000.1 Cmo06g01400 384962

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01400 175 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 27 107 IPR036312 -
Cmo06g01400 175 Pfam Probable lipid transfer 15 105 IPR016140 -
Cmo06g01400 175 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN 6 169 - -
Cmo06g01400 175 PRINTS Plant phospholipid transfer protein signature 82 99 IPR000528 GO:0006869|GO:0008289
Cmo06g01400 175 PRINTS Plant phospholipid transfer protein signature 48 62 IPR000528 GO:0006869|GO:0008289
Cmo06g01400 175 PRINTS Plant phospholipid transfer protein signature 27 43 IPR000528 GO:0006869|GO:0008289
Cmo06g01400 175 Gene3D - 25 102 IPR036312 -
Cmo06g01400 175 MobiDBLite consensus disorder prediction 116 150 - -
Cmo06g01400 175 SMART aai_6 28 105 IPR016140 -
Cmo06g01400 175 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 6 169 IPR043325 -
Cmo06g01400 175 CDD AAI_LTSS 35 97 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01400 - - - csv:101204822 285.034
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01400 Cmo14g01762 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01400 Cmo-Chr6:10257163 Cmo17g00215 Cmo-Chr17:1258168 1.72E-19 dispersed
Cmo20g00039 Cmo-Chr20:248345 Cmo06g01400 Cmo-Chr6:10257163 2.70E-10 dispersed
Cmo04g02253 Cmo-Chr4:16873421 Cmo06g01400 Cmo-Chr6:10257163 1.21E-06 transposed
Cmo19g00286 Cmo-Chr19:2095639 Cmo06g01400 Cmo-Chr6:10257163 1.20E-17 transposed
Cmo14g01762 Cmo-Chr14:13647205 Cmo06g01400 Cmo-Chr6:10257163 6.78E-103 wgd
Cmo17g00214 Cmo-Chr17:1253272 Cmo06g01400 Cmo-Chr6:10257163 1.18E-09 wgd
Cmo02g01838 Cmo-Chr2:10423094 Cmo06g01400 Cmo-Chr6:10257163 2.30E-33 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g528 . . . . . Bpe14g01197 . . . . . Cma14g01723 . Car14g01554 . Cpe08g00270 Cpe03g01446 . . . . . . . Cla06g00595 Cam06g0634 Cec06g0637 Cco06g0640 Clacu06g0620 Cmu06g0613 Cre06g1381 Cone14ag0860 Cone15ag0858 . . Lsi05g01618 . . . . . . . . . . . . Cmo06g01400 Cmo14g01762 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001192 1 2 1 1 1 3 3 3 3 3 3 3 3 3 3 3 3 4 3 3 2 2 1 2 3 3 3 2 3 4 77
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01400 Cmo_Chr06 FPKM 3.810466 2.617527 0.233301 0.549801 6.893101 6.259164 5.74051 0.304258 0.706366 0.616876
Cmo06g01400 Cmo_Chr00 FPKM 3.223844 2.354288 0.0 0.418356 5.813359 5.042476 4.757137 0.203373 0.612938 0.489746