Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01427 ATGGAGTTTGTAGACATAAATTTGGAATGTAGACCATTGTCGATCAAATTGTGGCCTCCTAGTGACAATACCCGGAATATGCTTGTGGAACGGATGACATCTAACCTTACCAGCAAATCCTTTTTCACCCAAAAGTATGGCACTCTTAGTCAGGAAGAGGCAACAGATGAGTCGAAGAGAATTGAAGACATTGCTTTTGCTACAGCTAATCAGAACTATGAAAACCACCCTGATGGTGATGGAAGTGCTGCTGTGCAACTTTATGCCAAGGAGTGTAGCAGGCTTCTTCTTGAGGTTCTTAAGAGAGGTCCTAGAGTCGAGGCAGACAAGGAGGAGGTTGGATCTGATATTGTTAGTGCTCCACGTGAAACCTTTTTCGACATCTCGAAAGGTCGACGGGAGTTTATTGAGGCGGAGGAAGCTGAAGAACTACTAAAGCCTTTGAAAGAGCCAGGGAATTCTTATACCAAGATATGTTTTAGCAACAGAAGCTTTGGTTTAGAAGCAGCTCGTGTTACTGAGCCCATTCTTGTATCCCTCAAGGATCAGTTAAAAGAAGTGGACCTCTCTGATTTTATTGCAGGAAGAACAGAGTCAGAAGCTCTAGAAGTCATGAAATTGTTCTCAGATGCTTTAGAAGGCAGCATCTTGAGGTCTCTGAACCTCTCAAACAACGCCTTAGGTGAGAAAGGTGTTAGAGCTTTTGGCTCTCTCCTGAAATCACAGACTTGGTTGGAGGAGCTATACTTGATGAATGATGGCATTTCCAAGGAAGCTGCTCAGGCAGTGTCCGAGTTGATTCCTTCAACAGATAAGCTTAGAGTCCTTCAATTTCATAATAACATGACAGGCGATGAAGGTGCGCTCGCCATAGCTGAAATCGTGAAGCGTTCTCCTCTGTTGGAAGATTTCCAATGCTCCTCTTCAAGGATAGACTCAGAAGGGGGAGTTGCCTTATGTATAGCACTCGAGACTTGTACCAACTTGAAGAAACTCGATCTTCGAGACAACATGCTTGGAGTGGAAGGTGGACTTGCTCTGAGTAAATCCCTTGCATACCATGTAGATCTCAAGGAGTTGTATTTGAGCTACCTGAACTTGGAAGACGAAGGTGCAATTGCCATAGCTAATGCACTAAAGGACACAGCTCCTGCACTAGAAGTCTTGGAAATGGCTGGTAATGACATAACAGCTGAAGCTGCTTCTGCATTAGCTGCTTGCATAGCTCAAAAATCCCATCTTACCAGCTTGAATCTGGCCGAGAATGAACTGAAGGATGAAGGAACTATCCTGATCAGTAAGGCACTAGAAGGTCACATCAAAATAAAAGAAGTTGATATGAGTACTAACTTAATAAGGCGGGCAGGGGCTCGGGTTTTAGCTCAGACTATGGTTCAGAAGCCTGGTTTTGTGCTGCTGAACATCAATGGAAATTTCATTTCTGATGAAGGCATTGATGAGGTGAAAGATATTTTCAAGAAACATCCGGATATGCTTGGGCCCTTGGATGAAAATGATCCTGAGGGGGTAGATGGCAATGAGGACGAGGACGAGGACGAGGATGAGGACAAGGATCCTGTAGCAGACGAGAACGATGAGGATGAATTGGGATCAAAACTAAAGAACCTTGAAGTTGATCAAGAGAACTAG 1650 44.06 MEFVDINLECRPLSIKLWPPSDNTRNMLVERMTSNLTSKSFFTQKYGTLSQEEATDESKRIEDIAFATANQNYENHPDGDGSAAVQLYAKECSRLLLEVLKRGPRVEADKEEVGSDIVSAPRETFFDISKGRREFIEAEEAEELLKPLKEPGNSYTKICFSNRSFGLEAARVTEPILVSLKDQLKEVDLSDFIAGRTESEALEVMKLFSDALEGSILRSLNLSNNALGEKGVRAFGSLLKSQTWLEELYLMNDGISKEAAQAVSELIPSTDKLRVLQFHNNMTGDEGALAIAEIVKRSPLLEDFQCSSSRIDSEGGVALCIALETCTNLKKLDLRDNMLGVEGGLALSKSLAYHVDLKELYLSYLNLEDEGAIAIANALKDTAPALEVLEMAGNDITAEAASALAACIAQKSHLTSLNLAENELKDEGTILISKALEGHIKIKEVDMSTNLIRRAGARVLAQTMVQKPGFVLLNINGNFISDEGIDEVKDIFKKHPDMLGPLDENDPEGVDGNEDEDEDEDEDKDPVADENDEDELGSKLKNLEVDQEN 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10355650 10357299 + CmoCh06G014270.1 Cmo06g01427 384989

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01427 549 MobiDBLite consensus disorder prediction 507 532 - -
Cmo06g01427 549 Gene3D WPP domain 14 112 IPR038214 -
Cmo06g01427 549 Gene3D Ribonuclease Inhibitor 423 499 IPR032675 -
Cmo06g01427 549 MobiDBLite consensus disorder prediction 496 549 - -
Cmo06g01427 549 Gene3D Ribonuclease Inhibitor 128 411 IPR032675 -
Cmo06g01427 549 Pfam Leucine Rich repeat 325 348 IPR001611 GO:0005515
Cmo06g01427 549 Pfam Leucine Rich repeat 386 405 IPR001611 GO:0005515
Cmo06g01427 549 Pfam Leucine Rich repeat 357 376 IPR001611 GO:0005515
Cmo06g01427 549 Pfam Leucine Rich repeat 217 235 IPR001611 GO:0005515
Cmo06g01427 549 Pfam Leucine Rich repeat 411 428 IPR001611 GO:0005515
Cmo06g01427 549 PANTHER RAN GTPASE-ACTIVATING PROTEIN 2 1 549 - -
Cmo06g01427 549 SUPERFAMILY RNI-like 135 509 - -
Cmo06g01427 549 Pfam WPP domain 14 109 IPR025265 -
Cmo06g01427 549 SMART LRR_RI_2 242 269 - -
Cmo06g01427 549 SMART LRR_RI_2 354 381 - -
Cmo06g01427 549 SMART LRR_RI_2 214 241 - -
Cmo06g01427 549 SMART LRR_RI_2 326 353 - -
Cmo06g01427 549 SMART LRR_RI_2 270 297 - -
Cmo06g01427 549 SMART LRR_RI_2 439 466 - -
Cmo06g01427 549 SMART LRR_RI_2 411 438 - -
Cmo06g01427 549 SMART LRR_RI_2 467 494 - -
Cmo06g01427 549 SMART LRR_RI_2 383 410 - -
Cmo06g01427 549 MobiDBLite consensus disorder prediction 533 549 - -
Cmo06g01427 549 PANTHER RAN GTPASE-ACTIVATING PROTEIN 1 1 549 IPR045203 GO:0005096
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01427 K14319 RANGAP1; Ran GTPase-activating protein 1 - csv:101208192 838.565
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01427 Cmo14g01734 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01427 Cmo-Chr6:10355650 Cmo08g00305 Cmo-Chr8:1877114 0 dispersed
Cmo14g01734 Cmo-Chr14:13529126 Cmo06g01427 Cmo-Chr6:10355650 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g461 . . . . . Bpe14g01174 . . . . Cma06g01424 Cma14g01690 Car06g01227 Car14g01523 Sed02g1253 . Cpe03g01424 Bhi01g00837 Tan10g0865 Cmetu09g1642 . . . Lcy11g1522 . . . . . . . . . . . Lsi05g01438 . . Cme06g00627 . . . Bda13g00139 . . . . . Cmo06g01427 Cmo14g01734 . . . . . . . . . . . . . Cla05g00563 Cam05g0619 Cec05g0629 Cco05g0624 Clacu05g0615 Cmu05g0583 Cre05g0651 . Csa03g01352 Chy06g00597 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001623 3 2 2 2 3 2 3 2 2 2 2 2 3 2 1 3 2 4 2 2 2 2 1 2 2 2 2 5 3 2 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01427 Cmo_Chr06 FPKM 26.125919 29.039795 8.03356 8.579693 20.601749 21.936705 21.081459 5.074312 3.808151 3.8909