Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01433 ATGCTGGGAGTATTCAGCAGCTCCATCATATCGCCGCCAGACGAGTTAGTGGCCGCCGGCTGCCGTACGCCGTCGCCCAAAACCACTTCCGCCACTCTCGTCAACCGCTTCGTCGACACCAACTCCTCCGCCGTGTCGGTGCAGGTCGGGGATCATGTCCACCTGGCCTACACTCACCAAAGTGAATCTCTCTTGACCCCACGATCGTTCGCAGTGAAGGACGACATCTTCTGTTTATTCGAGGGCGTTCTGGACAATTTGGGGAGCCTGAGGCAACAATACGGGCTAGCCAAATCGGCGAACGAGGTGGTTCTCGTCATCGAAGCTTACAAGGCCCTCCGTGATCGGGCCCCATACCCGCCGAGCCACGTCGTCGGCCATCTCAGCGGCAATTTCGCCTTCATCGTCTTCGACAAGTCCACCTCCACTCTCTTCGTCGCTTCTGATCGGAATGGGAAGGTTCCGTTGTATTGGGGAATCACCGCCGATGGTTATGTCGCCTTTTCCGATAACTCCGATCTTCTCAAGGGTTCTTGCGGGAAATCACTTGCTTCTTTCCCTCAAGGGTGTTTCTTATCTACAGCAGTTGGTGAATTGAGATGCTATCAGAATCCTAAGAACAAGATCACTGCTGTTCCTGCTAATGAGGAAGAGATTTGGGGTGCAACATTCAAGGTGGAGGGCCCTGCAGCTGTGGCGGCCACATGGTGA 711 54.85 MLGVFSSSIISPPDELVAAGCRTPSPKTTSATLVNRFVDTNSSAVSVQVGDHVHLAYTHQSESLLTPRSFAVKDDIFCLFEGVLDNLGSLRQQYGLAKSANEVVLVIEAYKALRDRAPYPPSHVVGHLSGNFAFIVFDKSTSTLFVASDRNGKVPLYWGITADGYVAFSDNSDLLKGSCGKSLASFPQGCFLSTAVGELRCYQNPKNKITAVPANEEEIWGATFKVEGPAAVAATW 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10387909 10391108 - CmoCh06G014330.1 Cmo06g01433 384995

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01433 236 Pfam Aluminium induced protein 2 226 IPR024286 -
Cmo06g01433 236 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 27 204 IPR029055 -
Cmo06g01433 236 PANTHER ALUMINUM INDUCED PROTEIN WITH YGL AND LRDR MOTIFS 1 233 IPR044828 -
Cmo06g01433 236 SMART DUF3700_2 2 226 IPR024286 -
Cmo06g01433 236 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 52 205 IPR029055 -
Cmo06g01433 236 PANTHER ALUMINUM INDUCED PROTEIN WITH YGL AND LRDR MOTIF PROTEIN 1 233 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01433 - - - csv:101209829 439.884
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01433 Cmo08g01138 CCT
Cmo06g01433 Cmo17g00253 CCT
Cmo06g01433 Cmo14g01725 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01433 Cmo-Chr6:10387909 Cmo14g01786 Cmo-Chr14:13754176 1.21E-62 dispersed
Cmo14g01725 Cmo-Chr14:13490374 Cmo06g01433 Cmo-Chr6:10387909 1.82E-161 wgd
Cmo17g00253 Cmo-Chr17:1491047 Cmo06g01433 Cmo-Chr6:10387909 1.46E-137 wgd
Cmo06g01433 Cmo-Chr6:10387909 Cmo08g01138 Cmo-Chr8:7267398 1.36E-140 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g439 . . . . . Bpe14g01319 . . Cmo08g01138 Cmo17g00253 Cma06g01430 Cma14g01680 Car06g01232 Car14g01514 Sed02g1266 Cpe08g00245 Cpe03g01418 Bhi01g00853 Tan10g0882 Cmetu06g2649 Lac12g2323 Hepe05g1526 . Lcy11g1512 Cla06g00549 Cam06g0592 Cec06g0589 Cco06g0597 Clacu06g0578 Cmu06g0573 Cre06g1339 . . Cone7ag0219 Cone4ag0211 Lsi05g01451 . . Cme06g00637 Blo02g00590 Blo07g00208 Bda11g00563 . . Bpe13g00620 Bma02g00692 Bma06g01542 . Cmo06g01433 Cmo14g01725 . Cma17g00267 Car08g01043 Car17g00241 Cpe12g00222 Cpe17g00129 Bhi12g01809 . . . . . . Cla05g00574 Cam05g0629 Cec05g0640 Cco05g0634 Clacu05g0625 Cmu05g0593 Cre05g0661 Lsi09g01353 Csa03g01363 Chy06g00607 Cme11g01931
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001929 2 2 1 2 2 2 4 2 2 2 2 2 3 2 2 4 2 2 3 2 2 1 2 2 3 2 2 4 2 1 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01433 Cmo_Chr06 FPKM 18.972279 18.745703 7.777029 8.551877 40.573521 41.134377 40.456398 0.348954 0.198437 0.261844
Cmo06g01433 Cmo_Chr00 FPKM 18.194265 18.167154 7.637378 8.57581 44.67812 45.058849 42.760654 0.364869 0.227498 0.241016