Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01435 ATGGCTCATATTGCTGTGGAGAGGAATAGGAGAAGGCAGATGAATGAACATCTTAGGGTTTTGAGAACTTTGACACCTTGTTTCTATATCAGAAGGGGAGATCAAGCGTCGATAATTGGGGGAGTGATCGAGTTCATTAAGGAGTTGCATCAAGTTTTGCAATCGTTGGAGTCGAACAAACGGAGGAGGAAGAGTGTGAGTCCGAGCCCGAGTCCGAGGCCGTTGGTGGCGGTTGCCGATGGATTTGAAAATGGAGTTGATGTCGGAGCTTGTTGTAACTCGTCGGTGGCGGATGTCGAAGCGAAGATTTCAGGTTCGAACGTGCTGTTGAAGATCATTTCTCGACGAATTCCCGGGCAACTTTCGAAGATGATTAGTGTGTTGGAGAGGCTGTCGTTTGAGGTTCTTCATCTCAACATCAGTAGTATGGATGACACTGTTCTTTACTCTTTTGTTGTCAAGATAGGGCTTGAATGTCAGCTAAGTTTGGATGAATTAGCCTTTGAAGTTCAACAAAGCTTCTGCTCTCAAGTTTACTTATGCCAGTGA 549 45.36 MAHIAVERNRRRQMNEHLRVLRTLTPCFYIRRGDQASIIGGVIEFIKELHQVLQSLESNKRRRKSVSPSPSPRPLVAVADGFENGVDVGACCNSSVADVEAKISGSNVLLKIISRRIPGQLSKMISVLERLSFEVLHLNISSMDDTVLYSFVVKIGLECQLSLDELAFEVQQSFCSQVYLCQ 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10398681 10400076 + CmoCh06G014350.1 Cmo06g01435 384997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01435 182 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 64 IPR036638 GO:0046983
Cmo06g01435 182 Pfam Helix-loop-helix DNA-binding domain 2 49 IPR011598 GO:0046983
Cmo06g01435 182 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983
Cmo06g01435 182 PANTHER TRANSCRIPTION FACTOR FAMA 1 179 IPR044283 GO:0003700|GO:0010052
Cmo06g01435 182 SMART finulus 4 55 IPR011598 GO:0046983
Cmo06g01435 182 Gene3D - 1 65 IPR036638 GO:0046983
Cmo06g01435 182 PANTHER TRANSCRIPTION FACTOR MUTE 1 179 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01435 Cmo-Chr6:10398681 Cmo14g01943 Cmo-Chr14:14376752 4.90E-51 dispersed
Cmo18g01328 Cmo-Chr18:12635767 Cmo06g01435 Cmo-Chr6:10398681 6.75E-28 dispersed
Cmo06g01435 Cmo-Chr6:10398681 Cmo12g00180 Cmo-Chr12:1176011 3.94E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10024 PF00010 HLH 1.50E-07 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01435 - - csv:101203445 303.523