Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo06g01435 | ATGGCTCATATTGCTGTGGAGAGGAATAGGAGAAGGCAGATGAATGAACATCTTAGGGTTTTGAGAACTTTGACACCTTGTTTCTATATCAGAAGGGGAGATCAAGCGTCGATAATTGGGGGAGTGATCGAGTTCATTAAGGAGTTGCATCAAGTTTTGCAATCGTTGGAGTCGAACAAACGGAGGAGGAAGAGTGTGAGTCCGAGCCCGAGTCCGAGGCCGTTGGTGGCGGTTGCCGATGGATTTGAAAATGGAGTTGATGTCGGAGCTTGTTGTAACTCGTCGGTGGCGGATGTCGAAGCGAAGATTTCAGGTTCGAACGTGCTGTTGAAGATCATTTCTCGACGAATTCCCGGGCAACTTTCGAAGATGATTAGTGTGTTGGAGAGGCTGTCGTTTGAGGTTCTTCATCTCAACATCAGTAGTATGGATGACACTGTTCTTTACTCTTTTGTTGTCAAGATAGGGCTTGAATGTCAGCTAAGTTTGGATGAATTAGCCTTTGAAGTTCAACAAAGCTTCTGCTCTCAAGTTTACTTATGCCAGTGA | 549 | 45.36 | MAHIAVERNRRRQMNEHLRVLRTLTPCFYIRRGDQASIIGGVIEFIKELHQVLQSLESNKRRRKSVSPSPSPRPLVAVADGFENGVDVGACCNSSVADVEAKISGSNVLLKIISRRIPGQLSKMISVLERLSFEVLHLNISSMDDTVLYSFVVKIGLECQLSLDELAFEVQQSFCSQVYLCQ | 182 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 10398681 | 10400076 | + | CmoCh06G014350.1 | Cmo06g01435 | 384997 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo06g01435 | 182 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 1 | 64 | IPR036638 | GO:0046983 | |
Cmo06g01435 | 182 | Pfam | Helix-loop-helix DNA-binding domain | 2 | 49 | IPR011598 | GO:0046983 | |
Cmo06g01435 | 182 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 1 | 49 | IPR011598 | GO:0046983 | |
Cmo06g01435 | 182 | PANTHER | TRANSCRIPTION FACTOR FAMA | 1 | 179 | IPR044283 | GO:0003700|GO:0010052 | |
Cmo06g01435 | 182 | SMART | finulus | 4 | 55 | IPR011598 | GO:0046983 | |
Cmo06g01435 | 182 | Gene3D | - | 1 | 65 | IPR036638 | GO:0046983 | |
Cmo06g01435 | 182 | PANTHER | TRANSCRIPTION FACTOR MUTE | 1 | 179 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo06g01435 | Cmo-Chr6:10398681 | Cmo14g01943 | Cmo-Chr14:14376752 | 4.90E-51 | dispersed | |
Cmo18g01328 | Cmo-Chr18:12635767 | Cmo06g01435 | Cmo-Chr6:10398681 | 6.75E-28 | dispersed | |
Cmo06g01435 | Cmo-Chr6:10398681 | Cmo12g00180 | Cmo-Chr12:1176011 | 3.94E-43 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10024 | PF00010 | HLH | 1.50E-07 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo06g01435 | - | - | csv:101203445 | 303.523 |