Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01445 ATGGTTGTAGGATCTTCGCTCTATCTCTATCTCTATCCTGCAATCTTCATCCCCTTGTTCTTCATCCGCCATTATCGACGAAGAAACCCACTTCTGGGTTTGATTTTCCTGCCACTCTCCGGCACTTCTCTTGTGCAAGAAATGGCTCAGATTTTAGCTCCATCTACTCAATGTCAACTGAGAACTAAACAGAGTTCAATGGGTGGAAGCCCCATAACCCCCAAGATGTGGAGTTCTTTACTTATGAAGCAGAGCAAGAAAGGAGGTGTGAAAAGCTCAGCAAAATTCAGAGTTTTGGCTCTCAAATCTGATGGTAGCACCATAAACAGGATGGAAGATCTGCTAAAACTGGACGTTACTCCATACACTGACAAGATCATTGCTGAATATATCTGGATTGGAGGATCTGGCATTGATTTGCGTAGTAAGTCAAGGACCATTTCAAAGCCTGTTGAACATCCATCTGAGCTACCTAAGTGGAACTACGATGGATCTAGTACTGGACAAGCACCTGGGGAAGACAGTGAAGTCATTCTATATCCTCAAGCAATTTTCAAGGATCCCTTCCGTGGTGGCAACAATATTTTGGTGATTTGTGATGCATACACACCAGCAGGTGAGCCCATCCCTACGAACAAACGCCACCGAGCTGCTGAGATTTTCAGCAACAAGAAGGTTGTGGATGAAGTTCCTTGGTATGGAATTGAGCAAGAGTACACCTTACTTCAGACAAATGTGAAGTGGCCATTAGGTTGGCCTGTTGGAGCTTATCCTGGACCTCAGGGTCCTTATTACTGTGGTGTCGGAGCCGATAAGTCGTTTGGTCGAGATATATCAGATGCTCACTACAAGGCTTGTTTATACGCCGGGATCAACATTAGTGGTACCAATGGAGAAGTCATGCCTGGCCAGTGGGAGTTTCAAGTTGGTCCTAGTGTTGGGATTGAAGCAGGAGATCATATTTGGTGTGCTAGATACATTCTTGAGAGAATTACCGAGCAAGCTGGGGTGGTTCTCTCACTTGATCCAAAACCAATTGAGGGTGACTGGAATGGAGCAGGATGCCACACCAATTACAGTACGAAGAGCATGAGAGAGGAAGGAGGGTTTGAAGTCATAAAGAAGGCTATTCTGAATCTGTCTCTTCGCCACAAGGAGCATATCAGTGCCTATGGAGAAGGAAATGAGAGGAGGTTGACAGGGAAGCACGAAACAGCAAGTATCAACTCCTTTTCCTGGGGAGTGGCTAACCGTGGTTGTTCGATCCGTGTGGGACGTGACACTGAGAAAGAAGGCAAAGGTTATTTGGAAGACCGACGTCCTGCTTCAAACATGGACCCATACGTCGTGACCTCGCTGCTGGCAGAATCAACACTACTGTGGGAGCCAACACTCGAAGCTGAAGCACTTGCTGCTCAGAAACTGGCATTGAAGGTCTAG 1440 46.39 MVVGSSLYLYLYPAIFIPLFFIRHYRRRNPLLGLIFLPLSGTSLVQEMAQILAPSTQCQLRTKQSSMGGSPITPKMWSSLLMKQSKKGGVKSSAKFRVLALKSDGSTINRMEDLLKLDVTPYTDKIIAEYIWIGGSGIDLRSKSRTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDAYTPAGEPIPTNKRHRAAEIFSNKKVVDEVPWYGIEQEYTLLQTNVKWPLGWPVGAYPGPQGPYYCGVGADKSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEFQVGPSVGIEAGDHIWCARYILERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGFEVIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASINSFSWGVANRGCSIRVGRDTEKEGKGYLEDRRPASNMDPYVVTSLLAESTLLWEPTLEAEALAAQKLALKV 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10458165 10462176 + CmoCh06G014450.1 Cmo06g01445 385007

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01445 479 ProSitePatterns Glutamine synthetase putative ATP-binding region signature. 344 360 IPR027303 -
Cmo06g01445 479 Pfam Glutamine synthetase, beta-Grasp domain 129 204 IPR008147 GO:0004356|GO:0006542|GO:0006807
Cmo06g01445 479 Gene3D - 108 210 IPR036651 GO:0004356|GO:0006542|GO:0006807
Cmo06g01445 479 SUPERFAMILY Glutamine synthetase/guanido kinase 211 460 IPR014746 GO:0003824
Cmo06g01445 479 ProSiteProfiles Glutamine synthetase (GS) beta-grasp domain profile. 126 206 IPR008147 GO:0004356|GO:0006542|GO:0006807
Cmo06g01445 479 Pfam Glutamine synthetase, catalytic domain 275 454 IPR008146 GO:0004356|GO:0006807
Cmo06g01445 479 ProSitePatterns Glutamine synthetase signature 1. 162 179 IPR027302 -
Cmo06g01445 479 PANTHER GLUTAMINE SYNTHETASE 108 462 - -
Cmo06g01445 479 ProSiteProfiles Glutamine synthetase (GS) catalytic domain profile. 210 479 IPR008146 GO:0004356|GO:0006807
Cmo06g01445 479 Gene3D Glutamine synthetase/guanido kinase, catalytic domain 211 463 - -
Cmo06g01445 479 SUPERFAMILY Glutamine synthetase, N-terminal domain 124 209 IPR036651 GO:0004356|GO:0006542|GO:0006807
Cmo06g01445 479 SMART Gln_synt_C_2 210 458 IPR008146 GO:0004356|GO:0006807
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01445 K01915 glnA, GLUL; glutamine synthetase [EC:6.3.1.2] - csv:101212441 821.231
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01445 Cmo14g01714 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01445 Cmo-Chr6:10458165 Cmo14g00845 Cmo-Chr14:4453512 0 dispersed
Cmo14g01714 Cmo-Chr14:13423553 Cmo06g01445 Cmo-Chr6:10458165 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g412 . . Bda03g01264 . . . Bma04g01174 . . . . Cma14g01668 Car06g01245 Car14g01502 Sed02g1281 Cpe08g00232 Cpe03g01408 Bhi01g00873 Tan10g0907 Cmetu06g1518 . . . . . . . . . . . . . Cone7ag0205 Cone4ag0196 Lsi05g01467 . . Cme06g00659 . . . Bda13g00143 . . . . . Cmo06g01445 Cmo14g01714 . . . . . . . . . . . . . . . . . . . . . Csa03g01384 Chy06g00627 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000333 5 5 3 4 4 4 2 4 4 4 4 4 7 3 4 8 4 8 7 4 4 4 2 4 4 3 4 9 5 5 136
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01445 Cmo_Chr06 FPKM 2.888312 0.0 4.324443 0.0 0.0 2.501023 0.0 4.233595 2.32123 2.653574