Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01449 ATGGCATCAATGGTCGCTAAGCCGAGTTGTCCTGCTACTAGCAACCATGGGCCTTCTTCAGTGCTTGTCCAGGAAAAAGGAAGTAGGAATAAGAGGAAATACCGAGCAGATCCACCTTTAGGGGACCTGAATAAGATCACATCTTCATCTCAAGATGAATGTCCGAGTTATGATTTTTCAGCTGAGAAATTTGAGATTAGTTCAAGTCTGGGGCAAATCGGTGCGTGTGATCTGTGTAGCATTAGTCAAGAATTTTCTGCTGGATTGAAACTCGATCTCGGATTGTCCAATGGAGGCTCTCCTGATGTTGGGATAGACTGGCCAAGAGGGGAACTAGAAGTTGATGAGTTCCAAGATGTTGATTGGAGTGACCTTACAGAAGCTCAGCTGGTAGAACTAATTTTATGCAATTTAGACACAATATTCAAGGCTGCAATCAAGAAAGTTGTTGCTTCTGGATTCACTGAAGAGGTTGCTATAAAAGCCATCTCGAGGTCTGGCATTTGTTTTGGTTGTAAAGATATCATGTCGAATGTAGTGGACAATACCTTAGCTTTCCTTAGAAGTGGCCAAGAAATTGATCAATCTAGGGAACACTATTTTGAGGATTTACAGCAACTAGAAAAATATATTTTAGCTGAATTAGTTTGTGTTCTACGAGAGGTTAGGCCTTACTTCAGCACTGGCGATGCAATGTGGTGCTTATTGGTCAGTGACATGAGTGTATCTCATGCATGTACAATGGATAGTGACCCGTCTAACGCAGGTGTCTGCGATGGGACTTCGAATGAGGGTTCAACTAACTCTACCCCACAGTTAAAAGCAGAAGCCAAAAGCTCTGAGTTGAATTTTCCTAAGCCTCTTAAGCCAATTTCTCCAATCAGCTGTGCTCATAGTTCTCAATCCGATGGACCAGCCACTCTAGGAGTTCCTAATCTTACTAAACCAAAGGACCCATTATTTTCAAGTGTATCAGTATCAGATAAAGAACTGCAAAATTCTGCCTCTGATGTTGCTAGGGAATCATTTAATGTGGCTGGAAACCCTCAAACTTCCGTGGCTGAAGAAAAAATTGGGAGCAGCAGAAGGGTTCATTCTAATATAACGAAGAGAGAATACATGCTACGACAAAAGTCGCTTCATGTGGATAAAAACTTTCGAACATATGGACCGAAAGGCCCATCAAGAGCTGGAAAGGTGACTGGTTTGGGGAGTTTGATGTTGGATAAGAAACTAAAGTCTGTTTCAGGCTCCACTGCAGTAAACTTTAAGAATGCTTCGCTGAAAATAAGCAAGGCTATGGGAATTGATGTGGCCCAAGACAATGGAAACCATAATCCTACCACCATCGACATTCCTTCTTCCTCTCTATCATTTAACTTGGAAAACAATAAAACTGCTTCTCCTTTTTCTAAGATCAATGTACTATCTTCAATGCCTGCGCCTAGTTCACCACTTGCATTACCAGCTACTAATACTTCTTCTGCGCTACCAGCAGCTGAAACTGATCTTTCTCTTTCTTTGCCCACTAAAAGCAATGAGCCCTCGGTGCCTATCAGCTGCAATACTGAGCCTTCTACAAGTAGTTTTGTTGAGAAGCCTTATGAAAAGTCCCTTGGGCAGTGGTTTCCTAAGGATAAGAAGGATGAGATGGTTTTGAAATTAGTACCAAGAGCTCGGGAATTACAAAGTCAGTTGCAAGAGTGGATGGAGTGGGCCAATCAAAAGGTCATGCAGGCTGCAAGGAGGCTAAGTAAGGACAAGGCTGAACTAAAGACTTTGAAGCAAGAAAAGGAGGAAGTTGAACGGCTGAAAAAGGAGAAGCAGACTTTGGAGGAAAATACCAAGAAGAAGCTTTCTGAGATGGAACATGCATTGTGCAAGGCTAGTGGGCAGGTTGAACTTGCTAACTCTGCTGTTAGAAGGCTTGAGGTGGAGAATGCTGCTCTACGACAGGAGATGGAGGTTGCAAAATTACGGGCTACAGAATCAGCTGCTACCTTTCAGGAGGTTTCTAAGAGGGAAAAGAAAACACTAGTAAACGTTCAATCATGGGAGAAGACGAAAATGTTGTTTCAGGAAGAACACACAGTCGAAAAACGAAAATTGAAACAACTAATACAGGAACTTGAGCAGGCCAGGGATGTCCAGGAACAACTTGAGGGTAGAGGGAAAATGGAGGCGAGAGCAAAAGATGAGCTGCTCATGCAGGCTGCTTCATTGAGAAAGGAGAGAGAACAAATTGAAGCTTCATTGAAAGCAAAGGAGGATACAATAAAATTGAAAGCAGAAAACAATCTTTTGAAGTACAAAAGCGATATCCAAAAGCTTGAAAAAGAAATATCTCAGTTGAGACTTAAGACAGATTCTTCCAGAATTGCTGCTCTTAAGAGAGGCATCGACGGAAGTTATGCCAGTAGGCTTATAGATACCAGAAACAGCACAGATCACAACGAGTCCTGGACCCCGAATGTCTCGGAATCGATGAAGGATCTTTACGAGTACTCTGGAACTGGGAGTGTGAAGCGGGAACGGGAGTGTGTAATGTGTCTTTCGGAGGAGATGTCGGTAGTGTTTCTTCCATGTGCCCATCAGGTGGTGTGCACAACCTGCAATGAACTACATGAAAAACAAGTGCGAACAGCCACGAAACGACACCGTATTGAAAAGAATTCATCAGACGCCAGGGCCAGGCTGAACTGTGAACCGCTCCTTCTTCTTCGATCCGCCGCCAGAACTGAGTTGCAGGCTCTGTCAAAACCCTCAATCCGTAAACCCCATCACTTTCTCTTCAATCATTTCATCGCCATTGAATTCGAAATGGGGTTCGAAAGCTATGTCGTCGTACATAACATAGCCAAAAGGCACAACGTTGGCACATTGGCCCGAAGCGCCACCGCGTTCGGTGTATCGGAGGTCATCCTCGTCGGCCGTCGGGACTTCAACGCCTTCGGTAGCCATGGTTCCACTTCTCACGTCCGGTTCCGTCATTTTCATTCCCTTCTCGACGCCCGAAATTTCCTTCAGGAGAAGGACTGTGATATATGTGGCGTGGAGATCACTGATAACGCCGTGGCTGTCAATCAGCATCCTTTCAAGAGGAGCACCGCTTTTCTTCTCGGCAACGAGGGAACAGGGCTTTCTGCTAAAGAGTGTGCAATCTGCGACTTCTTCATTTACATCCCACAATATGGTGTCGGCACCGCTTCTTTGAATGTCACTGTAGCTGCTTCAATTGTCCTACATCATTTTGGTGGCTTTCCCGAACGATGTCGTGATGGTAACAAGTTTATAGTGGCCGAAAGACCAGTAAAGCAAGGCAAGCGGAATTATTGCCCTGAAACAGAAGAATCTATTGTTGAAGAGCGAAAGTCCAGGCGGGATAATGCTTCGAAAGGCTTCTTTGACGAGGGAACGATCGATGATTCGACATCCAACCTTCTCGATACATTGTTTATTAACGAATGA 3468 44.23 MASMVAKPSCPATSNHGPSSVLVQEKGSRNKRKYRADPPLGDLNKITSSSQDECPSYDFSAEKFEISSSLGQIGACDLCSISQEFSAGLKLDLGLSNGGSPDVGIDWPRGELEVDEFQDVDWSDLTEAQLVELILCNLDTIFKAAIKKVVASGFTEEVAIKAISRSGICFGCKDIMSNVVDNTLAFLRSGQEIDQSREHYFEDLQQLEKYILAELVCVLREVRPYFSTGDAMWCLLVSDMSVSHACTMDSDPSNAGVCDGTSNEGSTNSTPQLKAEAKSSELNFPKPLKPISPISCAHSSQSDGPATLGVPNLTKPKDPLFSSVSVSDKELQNSASDVARESFNVAGNPQTSVAEEKIGSSRRVHSNITKREYMLRQKSLHVDKNFRTYGPKGPSRAGKVTGLGSLMLDKKLKSVSGSTAVNFKNASLKISKAMGIDVAQDNGNHNPTTIDIPSSSLSFNLENNKTASPFSKINVLSSMPAPSSPLALPATNTSSALPAAETDLSLSLPTKSNEPSVPISCNTEPSTSSFVEKPYEKSLGQWFPKDKKDEMVLKLVPRARELQSQLQEWMEWANQKVMQAARRLSKDKAELKTLKQEKEEVERLKKEKQTLEENTKKKLSEMEHALCKASGQVELANSAVRRLEVENAALRQEMEVAKLRATESAATFQEVSKREKKTLVNVQSWEKTKMLFQEEHTVEKRKLKQLIQELEQARDVQEQLEGRGKMEARAKDELLMQAASLRKEREQIEASLKAKEDTIKLKAENNLLKYKSDIQKLEKEISQLRLKTDSSRIAALKRGIDGSYASRLIDTRNSTDHNESWTPNVSESMKDLYEYSGTGSVKRERECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQVRTATKRHRIEKNSSDARARLNCEPLLLLRSAARTELQALSKPSIRKPHHFLFNHFIAIEFEMGFESYVVVHNIAKRHNVGTLARSATAFGVSEVILVGRRDFNAFGSHGSTSHVRFRHFHSLLDARNFLQEKDCDICGVEITDNAVAVNQHPFKRSTAFLLGNEGTGLSAKECAICDFFIYIPQYGVGTASLNVTVAASIVLHHFGGFPERCRDGNKFIVAERPVKQGKRNYCPETEESIVEERKSRRDNASKGFFDEGTIDDSTSNLLDTLFINE 1155
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10471969 10481752 + CmoCh06G014490.1 Cmo06g01449 385011

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01449 1155 PANTHER OS05G0141500 PROTEIN 14 878 - -
Cmo06g01449 1155 MobiDBLite consensus disorder prediction 1 52 - -
Cmo06g01449 1155 Gene3D - 701 727 - -
Cmo06g01449 1155 Coils Coil 693 723 - -
Cmo06g01449 1155 Coils Coil 731 758 - -
Cmo06g01449 1155 Gene3D - 941 1094 IPR029026 -
Cmo06g01449 1155 Gene3D Death Domain, Fas 728 855 IPR011029 -
Cmo06g01449 1155 Pfam Zinc finger, C3HC4 type (RING finger) 844 876 - -
Cmo06g01449 1155 Gene3D - 856 872 - -
Cmo06g01449 1155 Pfam SpoU rRNA Methylase family 946 1082 IPR001537 GO:0003723|GO:0006396|GO:0008173
Cmo06g01449 1155 Coils Coil 577 621 - -
Cmo06g01449 1155 CDD SpoU-like 945 1084 - -
Cmo06g01449 1155 Coils Coil 633 660 - -
Cmo06g01449 1155 MobiDBLite consensus disorder prediction 8 25 - -
Cmo06g01449 1155 Pfam Family of unknown function (DUF6592) 138 248 IPR046527 -
Cmo06g01449 1155 SUPERFAMILY alpha/beta knot 943 1084 IPR029028 -
Cmo06g01449 1155 PANTHER OS05G0141500 PROTEIN 14 878 IPR046934 -
Cmo06g01449 1155 Coils Coil 760 794 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01449 - - - csv:101214366 1466.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01449 Cmo-Chr6:10471969 Cmo16g01198 Cmo-Chr16:8558796 6.27E-12 dispersed
Cmo11g01195 Cmo-Chr11:7026281 Cmo06g01449 Cmo-Chr6:10471969 7.58E-08 transposed
Cmo14g01705 Cmo-Chr14:13384774 Cmo06g01449 Cmo-Chr6:10471969 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g396 . . . . . Bpe14g01162 . . . . Cma06g01447 . Car06g01250 . Sed02g1294 Cpe08g00227 . Bhi01g00892 Tan10g0918 Cmetu06g1283 . Hepe05g1500 . . . . . . . . . . . Cone7ag0193 Cone4ag0186 Lsi05g01478 . . Cme06g00669 Blo02g00565 . . . . . . . . Cmo06g01449 . . . . . . . . . . . . . . Cla05g00598 Cam05g0658 Cec05g0665 Cco05g0662 Clacu05g0651 Cmu05g0620 Cre05g0689 . Csa03g01394 Chy06g00637 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004013 2 1 1 2 2 1 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 3 0 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01449 Cmo_Chr06 FPKM 0.0 0.0 0.989776 1.036668 2.900389 1.674575 1.022413 6.465998 6.705791 6.847227