Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo06g01463 | ATGTCTTTGAAGAGCATAATTCAGGAAATGAGATCCAGGTCCCGCCGTGTGGTGCAGGATGGATCGACGGCCGAAGTCGGTGATGGTTTGGCGCAGAGCTGTTGGGTTCACATGCCTCAGGAGTTGCTGAGAGAGGTTTTGATTAGAATCGAGAGCTCTGAGAATGCTTGGCCTCCGCGGAAGAGCGTCGTGGCTTGCGCTGGAGTTTGCCGGAGCTGGAGACGGATTACTAAGGAGATTGTTAAAACTCCCGAAGTTTCTGGCACATTGACGTTTCCTATTTCCGTCAAGCAGCCTGGTCCAAGGGATTTGCTTCTTCATTGTTTCATAAAACGGAATCGATCCGCACAAACTTATTGCCTTTATCTTAGTTTGACGAGTGCACTTGCTGACGATGGAAAGTTTCTTCTTGCTGCCCGTAAGTGTCGACGGGCCACTTGCACTGATTATATAATATCACTGCATGCTGATGACATGTCCAAGGCAAGTGGCACCTTTATTGGAAAATTAAGATCTAACTTTTTAGGGACCAAGTTCACAATCGTTGATGGACAGCCACCTCATGCGGGAGCCAAGATCTCAAGAAGTCGCTCCTCTAGGCTTGTAGGCCTGAAACAAGTGTCACCTAGAGTTCCTGACGGCAACTACCCTGTGGCTCACATCTCATATGAGTTAAATGTCTTGGGTTCAAGACTTGAGTCTTTCTTTGTGAATCGTGCTGTTTCTCCAGAAAACGATCTGTTATCGAGATGTATTACTCTCATAATTCAAATAAACCCCTCCAATAAAATGTTGTTTGTCATTGTATATATACGCACTAATCTGCTTTTGCCTTGTTTCTGTATTAACCAGATACTAGAGGCTAATATGGTGTATGTCATCATCAGGGGTCCAAGAAGAATGCATTGCGTCATGGATGCTATTCCTGCCTCTGCTATTGAACCAGGAGGGGTGGCTCCAATACAGACTGAATTCTCCTCGAGCCGTATAGACTTTCTTCCATCAATGAGATTTTCCTGGTCGAAATCAAATGAACCAAATCACACCGATGATCAATCATCGGGATCTTCATCCAATCAGAAAGATGGACTTCTGGTGCTCAGAAACAAGGCTCCGCGGTGGCACGAACAGCTCCAATGTTGGTGTTTGAACTTTCACGGCCGAGTGACAATTGCTTCAGTGAAAAACTTTCAGTTAGTAGCTTCACCTGAAAATGGACCTGCTGGACCTGAACACGAGAAGATCATCCTTCAATTTGGAAAAGTAGGAAAGGATATATTTACAATGGACTACAGGTATCCAATCTCAGCGTTTCAGGCCTTCGCCATCTGCCTCAGCAGCTTCGACACAAAGATCGCTTGTGAATGA | 1368 | 45.39 | MSLKSIIQEMRSRSRRVVQDGSTAEVGDGLAQSCWVHMPQELLREVLIRIESSENAWPPRKSVVACAGVCRSWRRITKEIVKTPEVSGTLTFPISVKQPGPRDLLLHCFIKRNRSAQTYCLYLSLTSALADDGKFLLAARKCRRATCTDYIISLHADDMSKASGTFIGKLRSNFLGTKFTIVDGQPPHAGAKISRSRSSRLVGLKQVSPRVPDGNYPVAHISYELNVLGSRLESFFVNRAVSPENDLLSRCITLIIQINPSNKMLFVIVYIRTNLLLPCFCINQILEANMVYVIIRGPRRMHCVMDAIPASAIEPGGVAPIQTEFSSSRIDFLPSMRFSWSKSNEPNHTDDQSSGSSSNQKDGLLVLRNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGPAGPEHEKIILQFGKVGKDIFTMDYRYPISAFQAFAICLSSFDTKIACE | 455 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 10551013 | 10554431 | + | CmoCh06G014630.1 | Cmo06g01463 | 385025 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo06g01463 | 455 | Pfam | F-box domain | 37 | 82 | IPR001810 | GO:0005515 | |
Cmo06g01463 | 455 | ProSitePatterns | Tub family signature 2. | 440 | 455 | IPR018066 | - | |
Cmo06g01463 | 455 | PANTHER | TUBBY-LIKE F-BOX PROTEIN 9 | 1 | 231 | - | - | |
Cmo06g01463 | 455 | PANTHER | TUBBY-LIKE F-BOX PROTEIN 9 | 294 | 455 | - | - | |
Cmo06g01463 | 455 | PRINTS | Tubby superfamily signature | 412 | 431 | IPR000007 | - | |
Cmo06g01463 | 455 | PRINTS | Tubby superfamily signature | 385 | 401 | IPR000007 | - | |
Cmo06g01463 | 455 | PRINTS | Tubby superfamily signature | 367 | 384 | IPR000007 | - | |
Cmo06g01463 | 455 | PRINTS | Tubby superfamily signature | 150 | 166 | IPR000007 | - | |
Cmo06g01463 | 455 | PRINTS | Tubby superfamily signature | 433 | 455 | IPR000007 | - | |
Cmo06g01463 | 455 | SUPERFAMILY | Tubby C-terminal domain-like | 295 | 455 | IPR025659 | - | |
Cmo06g01463 | 455 | Gene3D | Tubby Protein; Chain A | 282 | 455 | IPR025659 | - | |
Cmo06g01463 | 455 | SUPERFAMILY | F-box domain | 29 | 78 | IPR036047 | GO:0005515 | |
Cmo06g01463 | 455 | Pfam | Tub family | 295 | 450 | IPR000007 | - | |
Cmo06g01463 | 455 | Pfam | Tub family | 96 | 231 | IPR000007 | - | |
Cmo06g01463 | 455 | PANTHER | TUBBY-RELATED | 1 | 231 | - | - | |
Cmo06g01463 | 455 | PANTHER | TUBBY-RELATED | 294 | 455 | - | - | |
Cmo06g01463 | 455 | Gene3D | Tubby Protein; Chain A | 95 | 238 | IPR025659 | - | |
Cmo06g01463 | 455 | SUPERFAMILY | Tubby C-terminal domain-like | 84 | 231 | IPR025659 | - | |
Cmo06g01463 | 455 | ProSitePatterns | Tub family signature 1. | 385 | 398 | IPR018066 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo06g01463 | Cmo-Chr6:10551013 | Cmo09g00146 | Cmo-Chr9:656942 | 1.58E-126 | dispersed | |
Cmo14g01689 | Cmo-Chr14:13253699 | Cmo06g01463 | Cmo-Chr6:10551013 | 1.31E-101 | wgd | |
Cmo06g01463 | Cmo-Chr6:10551013 | Cmo08g01177 | Cmo-Chr8:7495224 | 1.43E-76 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10029 | PF01167 | Tub | 2.30E-58 | CL0395 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo06g01463 | K19600 | - | csv:101217713 | 441.425 |