Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01463 ATGTCTTTGAAGAGCATAATTCAGGAAATGAGATCCAGGTCCCGCCGTGTGGTGCAGGATGGATCGACGGCCGAAGTCGGTGATGGTTTGGCGCAGAGCTGTTGGGTTCACATGCCTCAGGAGTTGCTGAGAGAGGTTTTGATTAGAATCGAGAGCTCTGAGAATGCTTGGCCTCCGCGGAAGAGCGTCGTGGCTTGCGCTGGAGTTTGCCGGAGCTGGAGACGGATTACTAAGGAGATTGTTAAAACTCCCGAAGTTTCTGGCACATTGACGTTTCCTATTTCCGTCAAGCAGCCTGGTCCAAGGGATTTGCTTCTTCATTGTTTCATAAAACGGAATCGATCCGCACAAACTTATTGCCTTTATCTTAGTTTGACGAGTGCACTTGCTGACGATGGAAAGTTTCTTCTTGCTGCCCGTAAGTGTCGACGGGCCACTTGCACTGATTATATAATATCACTGCATGCTGATGACATGTCCAAGGCAAGTGGCACCTTTATTGGAAAATTAAGATCTAACTTTTTAGGGACCAAGTTCACAATCGTTGATGGACAGCCACCTCATGCGGGAGCCAAGATCTCAAGAAGTCGCTCCTCTAGGCTTGTAGGCCTGAAACAAGTGTCACCTAGAGTTCCTGACGGCAACTACCCTGTGGCTCACATCTCATATGAGTTAAATGTCTTGGGTTCAAGACTTGAGTCTTTCTTTGTGAATCGTGCTGTTTCTCCAGAAAACGATCTGTTATCGAGATGTATTACTCTCATAATTCAAATAAACCCCTCCAATAAAATGTTGTTTGTCATTGTATATATACGCACTAATCTGCTTTTGCCTTGTTTCTGTATTAACCAGATACTAGAGGCTAATATGGTGTATGTCATCATCAGGGGTCCAAGAAGAATGCATTGCGTCATGGATGCTATTCCTGCCTCTGCTATTGAACCAGGAGGGGTGGCTCCAATACAGACTGAATTCTCCTCGAGCCGTATAGACTTTCTTCCATCAATGAGATTTTCCTGGTCGAAATCAAATGAACCAAATCACACCGATGATCAATCATCGGGATCTTCATCCAATCAGAAAGATGGACTTCTGGTGCTCAGAAACAAGGCTCCGCGGTGGCACGAACAGCTCCAATGTTGGTGTTTGAACTTTCACGGCCGAGTGACAATTGCTTCAGTGAAAAACTTTCAGTTAGTAGCTTCACCTGAAAATGGACCTGCTGGACCTGAACACGAGAAGATCATCCTTCAATTTGGAAAAGTAGGAAAGGATATATTTACAATGGACTACAGGTATCCAATCTCAGCGTTTCAGGCCTTCGCCATCTGCCTCAGCAGCTTCGACACAAAGATCGCTTGTGAATGA 1368 45.39 MSLKSIIQEMRSRSRRVVQDGSTAEVGDGLAQSCWVHMPQELLREVLIRIESSENAWPPRKSVVACAGVCRSWRRITKEIVKTPEVSGTLTFPISVKQPGPRDLLLHCFIKRNRSAQTYCLYLSLTSALADDGKFLLAARKCRRATCTDYIISLHADDMSKASGTFIGKLRSNFLGTKFTIVDGQPPHAGAKISRSRSSRLVGLKQVSPRVPDGNYPVAHISYELNVLGSRLESFFVNRAVSPENDLLSRCITLIIQINPSNKMLFVIVYIRTNLLLPCFCINQILEANMVYVIIRGPRRMHCVMDAIPASAIEPGGVAPIQTEFSSSRIDFLPSMRFSWSKSNEPNHTDDQSSGSSSNQKDGLLVLRNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGPAGPEHEKIILQFGKVGKDIFTMDYRYPISAFQAFAICLSSFDTKIACE 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10551013 10554431 + CmoCh06G014630.1 Cmo06g01463 385025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01463 455 Pfam F-box domain 37 82 IPR001810 GO:0005515
Cmo06g01463 455 ProSitePatterns Tub family signature 2. 440 455 IPR018066 -
Cmo06g01463 455 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 1 231 - -
Cmo06g01463 455 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 294 455 - -
Cmo06g01463 455 PRINTS Tubby superfamily signature 412 431 IPR000007 -
Cmo06g01463 455 PRINTS Tubby superfamily signature 385 401 IPR000007 -
Cmo06g01463 455 PRINTS Tubby superfamily signature 367 384 IPR000007 -
Cmo06g01463 455 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Cmo06g01463 455 PRINTS Tubby superfamily signature 433 455 IPR000007 -
Cmo06g01463 455 SUPERFAMILY Tubby C-terminal domain-like 295 455 IPR025659 -
Cmo06g01463 455 Gene3D Tubby Protein; Chain A 282 455 IPR025659 -
Cmo06g01463 455 SUPERFAMILY F-box domain 29 78 IPR036047 GO:0005515
Cmo06g01463 455 Pfam Tub family 295 450 IPR000007 -
Cmo06g01463 455 Pfam Tub family 96 231 IPR000007 -
Cmo06g01463 455 PANTHER TUBBY-RELATED 1 231 - -
Cmo06g01463 455 PANTHER TUBBY-RELATED 294 455 - -
Cmo06g01463 455 Gene3D Tubby Protein; Chain A 95 238 IPR025659 -
Cmo06g01463 455 SUPERFAMILY Tubby C-terminal domain-like 84 231 IPR025659 -
Cmo06g01463 455 ProSitePatterns Tub family signature 1. 385 398 IPR018066 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01463 Cmo-Chr6:10551013 Cmo09g00146 Cmo-Chr9:656942 1.58E-126 dispersed
Cmo14g01689 Cmo-Chr14:13253699 Cmo06g01463 Cmo-Chr6:10551013 1.31E-101 wgd
Cmo06g01463 Cmo-Chr6:10551013 Cmo08g01177 Cmo-Chr8:7495224 1.43E-76 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10029 PF01167 Tub 2.30E-58 CL0395 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01463 K19600 - csv:101217713 441.425