Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01464 ATGGGCTGCGTTTTTGGGCGCGAGGTTTCTGCGAAGCCCGTTCAGAGACCGAACGCCGATGACGAAATTAGGGCTTCTGCCAAGGCGGAGGTTCCTGAGATTCGAGCTGATGCTGCCGCTAATGTCCGCAATGGCGGAAGTAGGAACGAGGTTGATGATGATAGAGGTTCGAGGCCGAGGCGGCGATCGTCGAGGCCGAATCCGAGATTGAGTAATCCGCCGAAGCATGGCGAGCAAGTCGCCGCTGGTTGGCCGTCTTGGCTCTCCGCCGTCGCCGGTGAAGCTATCAATGGATGGATTCCTCGCCGTGCTGATAGTTTCGAGAAGCTTGATAAAATTGGGCAAGGGACGTATAGTAATGTGTACAAAGCCAGGGACTCTTTGACAGGGAAGATTGTGGCTCTGAAGAAGGTTCGTTTCGACAATTTGGAGCCCGAGAGCGTCAAGTTTATGGCCCGGGAAATTCTCATTCTGCGGCGTTTGGATCATCCAAATGTTGTTAAACTCGAAGGTTTGGTGACGTCCCGGATGTCGTGTAGTTTATATCTTGTATTTGAATACATGGAGCACGATCTGGCTGGACTTGCTGCGAGCCCCGGGATCAAGTTTACGGAATCGCAGGTTAAATGTTACATGAACCAATTGTTATCAGGGCTTGAACATTGTCACAACCGTCACGTGCTGCATCGTGATATAAAGGGATCGAATCTTCTGATCGATAACGATGGGATCCTTAGGATAGCTGATTTCGGTTTGGCGTCTGTCTTTGATCCTAACCACAAGCATCCGATGACAAGTAGGGTGGTTACGCTATGGTATCGACCTCCTGAACTTCTTCTTGGAGCTACTGATTATGGCGTCGGTGTAGACCTCTGGAGCGCTGGCTGCATTTTAGCCGAGCTGTTAGCTGGAAAGCCTATCATGCCCGGTCGCACTGAGGTAAAGCTCGTTAGCAATCCATGTTTCGTTCCGTCTTCAGTTCGTCGAATGCCGTTTGATCTTGTTGAGCAGCTGCATAAGATATTCAAGTTATGTGGCTCTCCTACAGAAGAATACTGGAAAAAGTCGAGGTTGCCTCATGCAACCATATTCAAGCCTCAACATTCATACAAGAGATGCATAGCAGAGACGTTTAAAGACTTCCCGCCGTCATCTCTGCCACTAATCGAGACGCTTCTCGCCATCGACCCCGCTGAACGCCTAACTGCCACCGCTGCTTTACATAGTGAATTTTTCACTACAAAGCCATATGCTTGTGAGCCTTCCAGTCTTCCTAAGTATCCTCCAAGCAAGGAAATGGATGCAAAACTACGGGATGAAGAAGCTAGAAGGCTAAGAGCTGTTGGCAGAAGCAATGCAGATGGAGTGAAGGGAACACGGGCACGCGATCGAGCTGTTCGGGCAATTCCTGCTCCAGAAGCCAATGCTGAGCTTCAAGCCAATCTCGATAGACGACGTCTCATAACACACGCAAATGCGAAGAGCAAGAGTGAAAAGTTTCCTCCTCCACATCAAGACGGAGCGATTGGCTACCAACTGGGATCTTCGCATCACGTCGATCCGATCTATGATCCTCCCGACGTTCCATTTAGCACCATGAATTTCTCGTATCCAAAAGCAAGCATCCAAACATGGTCTGGTCCCTTGATGGACCCAGGTGCTGTTGGTGCTCCTCCAAGAAGGAGAAAACACACCGCAGGTCATTCATCAAGATCATCATCCAAGGACTTGAATAAGGATAAAAGTTCTGCTCGTATCTAA 1761 49.46 MGCVFGREVSAKPVQRPNADDEIRASAKAEVPEIRADAAANVRNGGSRNEVDDDRGSRPRRRSSRPNPRLSNPPKHGEQVAAGWPSWLSAVAGEAINGWIPRRADSFEKLDKIGQGTYSNVYKARDSLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAASPGIKFTESQVKCYMNQLLSGLEHCHNRHVLHRDIKGSNLLIDNDGILRIADFGLASVFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVKLVSNPCFVPSSVRRMPFDLVEQLHKIFKLCGSPTEEYWKKSRLPHATIFKPQHSYKRCIAETFKDFPPSSLPLIETLLAIDPAERLTATAALHSEFFTTKPYACEPSSLPKYPPSKEMDAKLRDEEARRLRAVGRSNADGVKGTRARDRAVRAIPAPEANAELQANLDRRRLITHANAKSKSEKFPPPHQDGAIGYQLGSSHHVDPIYDPPDVPFSTMNFSYPKASIQTWSGPLMDPGAVGAPPRRRKHTAGHSSRSSSKDLNKDKSSARI 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10556839 10560626 - CmoCh06G014640.1 Cmo06g01464 385026

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01464 586 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Cmo06g01464 586 PANTHER CELL DIVISION PROTEIN KINASE 54 315 - -
Cmo06g01464 586 PANTHER CELL DIVISION PROTEIN KINASE 335 566 - -
Cmo06g01464 586 Gene3D Transferase(Phosphotransferase) domain 1 190 451 - -
Cmo06g01464 586 ProSitePatterns Protein kinases ATP-binding region signature. 113 136 IPR017441 GO:0005524
Cmo06g01464 586 SMART serkin_6 107 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g01464 586 SUPERFAMILY Protein kinase-like (PK-like) 100 417 IPR011009 -
Cmo06g01464 586 MobiDBLite consensus disorder prediction 569 586 - -
Cmo06g01464 586 Gene3D Phosphorylase Kinase; domain 1 94 189 - -
Cmo06g01464 586 MobiDBLite consensus disorder prediction 543 586 - -
Cmo06g01464 586 CDD STKc_CDK9_like 107 412 - -
Cmo06g01464 586 MobiDBLite consensus disorder prediction 14 31 - -
Cmo06g01464 586 ProSiteProfiles Protein kinase domain profile. 107 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g01464 586 MobiDBLite consensus disorder prediction 492 513 - -
Cmo06g01464 586 MobiDBLite consensus disorder prediction 47 61 - -
Cmo06g01464 586 MobiDBLite consensus disorder prediction 1 79 - -
Cmo06g01464 586 PANTHER OS01G0367700 PROTEIN 54 315 - -
Cmo06g01464 586 PANTHER OS01G0367700 PROTEIN 335 566 - -
Cmo06g01464 586 Pfam Protein kinase domain 107 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01464 K08819 CDK12_13; cyclin-dependent kinase 12/13 [EC:2.7.11.22 2.7.11.23] - csv:101217952 981.089
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01464 Cmo14g01688 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01464 Cmo-Chr6:10556839 Cmo12g01117 Cmo-Chr12:10215589 0 dispersed
Cmo13g00857 Cmo-Chr13:7852988 Cmo06g01464 Cmo-Chr6:10556839 7.34E-67 dispersed
Cmo11g01308 Cmo-Chr11:8971984 Cmo06g01464 Cmo-Chr6:10556839 0 transposed
Cmo14g01688 Cmo-Chr14:13249022 Cmo06g01464 Cmo-Chr6:10556839 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g361 . . . . . Bpe14g01150 . . . . Cma06g01464 Cma14g01644 Car06g01263 Car14g01474 . Cpe08g00215 Cpe03g01388 Bhi01g00949 . . . . . . . . . . . . . . . Cone7ag0178 Cone4ag0174 Lsi05g01501 . . Cme06g00688 Blo02g00578 Blo07g00189 . . . Bpe13g00648 . . . Cmo06g01464 Cmo14g01688 . . . . . . . . . . . . . Cla05g00613 Cam05g0674 Cec05g0684 Cco05g0679 Clacu05g0668 Cmu05g0636 Cre05g0708 . Csa03g01412 Chy06g00655 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000603 3 3 4 2 3 3 5 2 2 3 3 3 5 3 3 5 2 4 5 2 3 3 3 3 3 3 3 3 1 2 92
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74436 PF00069 Pkinase 3.50E-66 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01464 Cmo_Chr06 FPKM 9.842608 10.351346 15.303838 15.144908 12.03991 14.203446 12.586041 12.155693 12.810735 11.873409
Cmo06g01464 Cmo_Chr00 FPKM 5.137552 6.146276 8.283054 8.548314 7.308506 7.392811 7.610247 6.477757 6.38327 6.522569