Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01473 ATGATTAAGGCTATAGAAAGGGCAAAATATAAATCGAAGACATGGAGTGTATCTGATGCTAAGAACGAACCAACTGTTCAAAAGGATGGAACAACGGCACATATTGCAGCTCAAACGTTTACGTTTCGGGAGCTTGCTACAGCGACAAAGAACTTTAGACCTGAATGCTTATTGGGAGAAGGGGGGTTTGGACGAGTTTACAAGGGCCGCTTGGACAGCACGGGACAGGTAGTGGCTGTGAAGCAGCTTGACCGTAATGGTCTCCAAGGAAATCGGGAATTTTTGGTTGAAGTTCTAATGCTTAGCCTGTTACATCACCCAAATCTTGTTAACTTGATAGGCTACTGTGCTGATGGCGATCAACGGCTTCTTGTTTACGAGTTCATGCCATTGGGGTCGTTGGAAGATCATTTACATGATTTTCCACCAGATAAGGAGCCCTTGAATTGGAATACTAGAATGAAGATCGCAGCTGGTGCTGCAAAAGGATTGGAATATTTGCATGACAAAGCGAGCCCGCCTGTTATATATCGGGACTTGAAGTCGTCCAATATTCTTCTAGACGAGGGCTACCATCCCAAGCTGTCAGATTTCGGTCTTGCGAAACTAGGTCCAGTTGGTGATAAGACTCACGTCTCGACGAGAGTAATGGGAACATATGGTTATTGTGCTCCGGAGTATGCTATGACTGGTCAACTCACTCTCAAGTCAGATGTATATAGTTTTGGAGTCGTCTTTCTTGAACTTATCACAGGGCGCAAGGCGATCGATAATACCAGAGGTCCGGGAGAGCATAATCTTGTAGCGTGGGCTCGGCCACTTTTTAAAGATCGTCGAAAGTTCCCTAAGATGGCCGATCCGCTGCTGCAAGGTCGTTATCCCACGCGGGGGCTTTATCAGGCATTGGCAGTTGCGGCAATGTGCTTGCAAGAGCAGGCTGCTACTCGACCTCTAATCGGGGACGTAGTTACTGCTCTGACGTATTTAGCCTCGCAAACTTATGATCCTAATACAGCTGCTTCTCAAAGCAATCGAATGAGTGTTACTACTCCACAATCCCGAGATGAGCGGAGAGGCGTGCCAGATGGATTGGATAGTCCTGATGAGCGTGGTCGAGGACGTTGTTCCCCGTCAAACTACAGAAACTCTGGAGGTACCGAGCTAAGCAGAATTGACACGGGAGGCGGGTCTGGTCGAAAATGGGAATTGGATAAGTTAGAACAACAAGAGTCTCTACGAGACAGTCCTGCATATACAGGACGAGCAAGGGAAACACCGAAGAACCGCGACGTAAACAGAGAACGTGCAGTTGCAGAAGCAAAAATGTGGGGTGAAAACTGGAAAGATAGAAACCGGGCAAACGCGCAAGGCAGCTTCGACAGTTCACAAGAATGA 1395 47.46 MIKAIERAKYKSKTWSVSDAKNEPTVQKDGTTAHIAAQTFTFRELATATKNFRPECLLGEGGFGRVYKGRLDSTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDFPPDKEPLNWNTRMKIAAGAAKGLEYLHDKASPPVIYRDLKSSNILLDEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRGPGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPTRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNTAASQSNRMSVTTPQSRDERRGVPDGLDSPDERGRGRCSPSNYRNSGGTELSRIDTGGGSGRKWELDKLEQQESLRDSPAYTGRARETPKNRDVNRERAVAEAKMWGENWKDRNRANAQGSFDSSQE 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10592585 10596352 - CmoCh06G014730.1 Cmo06g01473 385035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01473 464 Gene3D Transferase(Phosphotransferase) domain 1 129 353 - -
Cmo06g01473 464 MobiDBLite consensus disorder prediction 397 411 - -
Cmo06g01473 464 MobiDBLite consensus disorder prediction 337 464 - -
Cmo06g01473 464 CDD STKc_IRAK 58 327 - -
Cmo06g01473 464 PANTHER OS07G0668900 PROTEIN 14 458 - -
Cmo06g01473 464 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL27 14 458 - -
Cmo06g01473 464 SMART serkin_6 52 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g01473 464 ProSitePatterns Protein kinases ATP-binding region signature. 58 81 IPR017441 GO:0005524
Cmo06g01473 464 MobiDBLite consensus disorder prediction 351 375 - -
Cmo06g01473 464 MobiDBLite consensus disorder prediction 423 448 - -
Cmo06g01473 464 ProSiteProfiles Protein kinase domain profile. 52 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g01473 464 MobiDBLite consensus disorder prediction 376 390 - -
Cmo06g01473 464 Gene3D Phosphorylase Kinase; domain 1 22 128 - -
Cmo06g01473 464 Pfam Protein kinase domain 57 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g01473 464 SUPERFAMILY Protein kinase-like (PK-like) 34 326 IPR011009 -
Cmo06g01473 464 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g01473 Cmo14g01676 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01473 Cmo-Chr6:10592585 Cmo17g01367 Cmo-Chr17:10614486 0 dispersed
Cmo08g00072 Cmo-Chr8:389249 Cmo06g01473 Cmo-Chr6:10592585 2.84E-174 dispersed
Cmo09g00054 Cmo-Chr9:219005 Cmo06g01473 Cmo-Chr6:10592585 6.78E-145 dispersed
Cmo20g00489 Cmo-Chr20:2288463 Cmo06g01473 Cmo-Chr6:10592585 1.89E-163 dispersed
Cmo14g01676 Cmo-Chr14:13208212 Cmo06g01473 Cmo-Chr6:10592585 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74437 PF00069 Pkinase 1.10E-45 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01473 - - csv:101207561 854.744