Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01475 ATGGAGAGAGTTAGAAGGATGGTTTCAGAGAGGCCGGTCGTGATCTTCAGCAAGAGCACGTGCTGCATGAGCCACACTGTGATGAGGCTGCTGAGTGGGTTTGGGGTTAACCCGGCGGTGCACGAGGTGGACCAGATCGCTCGAGGCAGGGAGATCGAGCAGGCTCTGTCTATGCTTGGCTTTAGCCCCACGGTTCCGGCTGTCTTCATTGGCGGCCAACTGGTCGGTGGAACCAATGAAATTATGACACTTCATCTTAATCGCTCCCTCATTCCCATGCTTACCGCTGCTGGCGCTTTATTGAAAGTCCAGCTTTCGGATCCTGCTCAGGGAACTAGGAGTCCTATAAGACACCCCAAACGAGTGACCAGCTCTAATACTGAATGTGCTGCTGCACCTACAAGTAGGCAGTCTGAAGAGCATGATGGCCAACGTGCTTCTGACGTTCCTCATACCAGTATTGGTGCTTTGGGACAGTCTGAGAATTGGATGGTCTTGTCAATTGCAGGGGAAAAACCAGCTCCTCGTTTCAATCATGCAGCAACTGTTATTGGAAATAAGATGATTGTTGTTGGTGGCGAATCTGGGAATAGGTTATTGGATGATGTACAGGTGCTTAATTTTGATAAATATACCTGGAGCACAGCCTCATCAAAGCTTTACTTATCACCTAGCTCACTGCCATTGAAGATCCCTGCATGCAAGGGTCACAGTCTGGTTTCATGGGGGAAGACAGCTCTCCTGGTTGGGGGCAAGACAGAGCCAGGAAATGAGAGAATTGCAGTCTGGGCATTTGACACAGAGACAGAATGTTGGTCGCTGATGGAAGCCAAGGGAGATATACCTGTTTCTAGAAGTGGTCACACTGTAGTTAGAGCTAGCTCTGTCTTAATCCTCTTTGGTGGTGAAGATAGTCGGAGGAGGAAACTCAACGACCTTCACATGTTTGACCTTAAATCGTTTACCTGGCTCCCTCTACATTGCACAGGAACAGGACCATCTGCAAGATCCAACCATGTGGCCGCTCTTTATGATGATAAAACACTACTTATATTTGGAGGGACATCAAAATCCCGGACCCTGAATGATTTATACTCACTTGACTTTGAGACAATGGTGTGGTCAAGAATAAAGGTACGGGGTTTCCATCCATCACCTAGAGCTGGTTGCTGTGGTGTTCTCTGTGGAACTAGATGGTGCATAGCAGGGGGTGGAAGCAGGAAAAAAAGACATACAGACACCTTAATCTTTGATGTACTGAAACATGAGTGGTCTGTTGCTGTCACGTCTCCTCCATCTTCTGTCACCACCAATAAGGGTTTCAGCTTAGTGCTCGTGCAGCACAAGGAGAAAGATTTACTTCTTCTTGCATTTGGGGGATCCAAAAAGGAGCCATCAAATCAGGTTGAAGTATTGACCATGGAAAAGAAAGAACCATCCTTTAGGCACCGATCCAATCCTATTGACCCGACTGCTAGACAAAATCTAGCATCTGCTATTGGACACGGTTCTGGAAGAAAATCCATCTCAGAGTTCGCACTTATTGATCCAAGTCCTGTTCCTGGAAATATTTCACTGCGCAAGCAATTTAATAATGATGAAGCCTTTGACAAAACTACTAAGATAACCAAGACTCCAGAAGATGATTCCTCTACTTCTCAGGCAACAGAAAACAAGATAACTCAATCTGGAAGTGAATTCCACGGGGAGACACTACCTTCTGTATACGAATATGACAGTTCAAATCCCTTCAAGGAGGGAGTTGGATATCATCCCATGGATAACACTGATCTATTCAGCGACAACAGTGGCAAAGTAGTAACATCATCCACTTTTTCGAGCATATATCAGTTCTATGAAGCGAAAATGGCGGCATTGATTAGAAAGAATGGAGTTCTCGAAGGGCAATTAGCAGCAGCCATGGCAAGTCGAGAAGCTGTGGAGAAGAATTTATCTTCTGCTCTAAAGATCCGGCAGGAGATGGAGAAAAGAATAGCTGATATGATAAAGGAGATGGAAATGCTGAGAGATAAGCTAGCAGGAGTAGAAATAGCAAAAGAAGAGGCCAACAGCCTGTCAAACATCGTCCACTCTGACAATGTCCGCCTTGAACATGATGTTGCTTTCCTCAAAGCAGTTTTGGATGACACCCAGAAGGAGCTTCATTCTACTAGAGGAGTCCTTGCTGGAGAAAGGGCCAGGGCTTTCCAACTTCAGGTTGAAGTATTCCATCTAAAGCAAAGATTGCAGTCCATGGAGAACCGAGCACCGACGCCGAGGAAACCGTTCCATATGTAG 2298 46.13 MERVRRMVSERPVVIFSKSTCCMSHTVMRLLSGFGVNPAVHEVDQIARGREIEQALSMLGFSPTVPAVFIGGQLVGGTNEIMTLHLNRSLIPMLTAAGALLKVQLSDPAQGTRSPIRHPKRVTSSNTECAAAPTSRQSEEHDGQRASDVPHTSIGALGQSENWMVLSIAGEKPAPRFNHAATVIGNKMIVVGGESGNRLLDDVQVLNFDKYTWSTASSKLYLSPSSLPLKIPACKGHSLVSWGKTALLVGGKTEPGNERIAVWAFDTETECWSLMEAKGDIPVSRSGHTVVRASSVLILFGGEDSRRRKLNDLHMFDLKSFTWLPLHCTGTGPSARSNHVAALYDDKTLLIFGGTSKSRTLNDLYSLDFETMVWSRIKVRGFHPSPRAGCCGVLCGTRWCIAGGGSRKKRHTDTLIFDVLKHEWSVAVTSPPSSVTTNKGFSLVLVQHKEKDLLLLAFGGSKKEPSNQVEVLTMEKKEPSFRHRSNPIDPTARQNLASAIGHGSGRKSISEFALIDPSPVPGNISLRKQFNNDEAFDKTTKITKTPEDDSSTSQATENKITQSGSEFHGETLPSVYEYDSSNPFKEGVGYHPMDNTDLFSDNSGKVVTSSTFSSIYQFYEAKMAALIRKNGVLEGQLAAAMASREAVEKNLSSALKIRQEMEKRIADMIKEMEMLRDKLAGVEIAKEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSMENRAPTPRKPFHM 765
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10606999 10614872 + CmoCh06G014750.1 Cmo06g01475 385037

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01475 765 Pfam Glutaredoxin 13 75 IPR002109 -
Cmo06g01475 765 TIGRFAM GlrX-like_plant: glutaredoxin-like family 4 100 IPR011905 -
Cmo06g01475 765 SUPERFAMILY Thioredoxin-like 1 100 IPR036249 -
Cmo06g01475 765 MobiDBLite consensus disorder prediction 108 134 - -
Cmo06g01475 765 PANTHER ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 5 99 764 - -
Cmo06g01475 765 ProSiteProfiles Glutaredoxin domain profile. 1 101 - -
Cmo06g01475 765 SUPERFAMILY Kelch motif 162 429 IPR015915 GO:0005515
Cmo06g01475 765 Coils Coil 700 720 - -
Cmo06g01475 765 CDD GRX_GRXh_1_2_like 12 93 - -
Cmo06g01475 765 PANTHER GALACTOSE OXIDASE/KELCH REPEAT SUPERFAMILY PROTEIN 99 764 - -
Cmo06g01475 765 Gene3D Glutaredoxin 1 103 - -
Cmo06g01475 765 MobiDBLite consensus disorder prediction 546 568 - -
Cmo06g01475 765 Gene3D - 279 580 IPR015915 GO:0005515
Cmo06g01475 765 MobiDBLite consensus disorder prediction 541 568 - -
Cmo06g01475 765 Pfam Galactose oxidase, central domain 297 339 - -
Cmo06g01475 765 Pfam Kelch motif 175 218 IPR006652 GO:0005515
Cmo06g01475 765 Gene3D - 142 278 IPR015915 GO:0005515
Cmo06g01475 765 Coils Coil 644 692 - -
Cmo06g01475 765 MobiDBLite consensus disorder prediction 108 153 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01475 - - - bhj:120076871 1220.3
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01475 Cmo14g01674 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01475 Cmo-Chr6:10606999 Cmo12g01080 Cmo-Chr12:9909759 2.92E-69 dispersed
Cmo11g00055 Cmo-Chr11:255949 Cmo06g01475 Cmo-Chr6:10606999 3.19E-07 dispersed
Cmo14g01674 Cmo-Chr14:13190556 Cmo06g01475 Cmo-Chr6:10606999 0 wgd
Cmo17g00300 Cmo-Chr17:1807573 Cmo06g01475 Cmo-Chr6:10606999 5.79E-42 wgd
Cmo17g01095 Cmo-Chr17:9034308 Cmo06g01475 Cmo-Chr6:10606999 1.44E-28 wgd
Cmo06g01475 Cmo-Chr6:10606999 Cmo08g01183 Cmo-Chr8:7526341 1.87E-39 wgd
Cmo06g01475 Cmo-Chr6:10606999 Cmo08g00388 Cmo-Chr8:2407467 1.33E-31 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g346 . . . . . Bpe14g01142 . . . . Cma06g01478 Cma14g01635 Car06g01272 Car14g01462 Sed02g1213 Cpe08g00204 Cpe03g01377 Bhi01g00968 Tan10g0971 Cmetu06g2006 . Hepe05g1470 . Lcy11g1437 . . . . . . . . . Cone7ag0168 Cone4ag0165 Lsi05g01515 . . Cme06g00705 Blo02g00587 . . Bda13g00168 . . . . . Cmo06g01475 Cmo14g01674 . . . . . . . . . . . . . Cla05g00628 Cam05g0688 Cec05g0697 Cco05g0694 Clacu05g0682 Cmu05g0650 Cre05g0721 . Csa03g01429 Chy06g00669 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007218 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01475 Cmo_Chr06 FPKM 4.550224 4.342982 5.380016 6.193429 10.087869 9.110079 10.334167 4.970798 4.889471 4.335264