Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01479 ATGAAGCCGTACGGTCAGTCTATGGAAGGCTCTCAGTCCGATCCGTCGCCTGAATGGACTGCGTCGGGACCTGATACAGGTCATGGAGAGCCGGTTTGGCCGTTGGGATCGAGGGAACGGGAATCGTACCCTGAAAGGCCTGAAGAGGCTGATTGTATATACTATCTACGTACCGGATTTTGTGGATATGGCTCTCGTTGTAGGTTCAATCATCCTCGTGAGCGTAGCGCGGTTTTGGGAGGTTCGAGAACTGGTGGAAGAGACTATCCCGAACGAGTAGGGCAGCCTTTGTGCCAGTACTATATGAGGACAGGAATGTGCAAATTTGGTGCTTCCTGTAAGTATCACCATCCTCAGCAGGAAATGGGTTCTCTCAGCCCTGTGTCTTTGAATTTCTATGGCTATCCACTTCGGCAGGGGGAAAAGGAGTGCTCTTATTATTTGAAGAATGGGCAGTGCAAGTTTGGTGCTACGTGCAAATTTCATCACCCTGAACCGGCTGGTTTGCAGTTTCCAGCACCATCACCCGTTCAGGTTGCACCACTGCCAGCTCCAATGCCTCCTGCACCGTCTGTTTATCCGCCCGTGCAGTCTCCATCTGCACATTCGTCACAGCAGTATGGAGTAATACTAGCAAGGTCTCCAATGCTGTCAAGCCCTTATGTTCCCAGCCCTTATGGTCCTATGTTGGTCTCCCCAGGGGTTGTACAATTCCCAAGTTGGAATCCTTACCAAGCACCTATGAGTCCAGTAGCCTCTCCCAGTGCTCAACCTTCTGTTGGATCAGGGCAACTTTATGGTATGGCACAAGTTTCGCCTTCTGCACCTACCTATGCTGGATCTTACCAGCCAATGCCATCTGCTGGTGCGTCAAGTACTAGCCAGAAGGAGCACTCGTTTCCAGAAAGACCTGGGCAGCCAGAGTGTCAATATTACATGAGAACAGGGGATTGTAAATTTGGATCTTCTTGTAGATACCATCACCCACCAGAATTGGTTAATTCAAGATCAAGTGTTGTTCTTAGCCAAATAGAGCATGGTTTGACTGCTAAGTTGCGGACATTTGCAGTTAGCTATGCAGCTGCTATCCTTGCGAGTCAAAAGGCTAGATTGAGTTTATTATCATTATTCAAATACTACGGTGCACCACCTTGTACTCACTTCATGCAACGAGGAATATGCAAGTTTGGCCCTGCATGCAAATTTGACCACTCGATGGAACGACTTAGCTACAGTCCATCTGCATCATCTCTTGCTGATATGCCAGTGGCACCTTACCCTGTGGGATCGGTAGTCGGTACTTTAGCCCCATCATTTTCATCCTCAGAGTTGAGGCCTGAACATTTTTCAGGACCCAGAATGGATTCTAACCCTTCAAGAATGTCTTCATCAATGAGCACCTCTAGTGGATTGGCTGGTTCAACTACATCGAGGACAGAAATGCATTCTCATTCAAATGTTCAACGATCTTCTCAAAGTTCTGGCCTGTCAGCGAGCAGTACCTCCAGCACCACCAGTGTGGAGGGACGTACTTGA 1536 48.5 MKPYGQSMEGSQSDPSPEWTASGPDTGHGEPVWPLGSRERESYPERPEEADCIYYLRTGFCGYGSRCRFNHPRERSAVLGGSRTGGRDYPERVGQPLCQYYMRTGMCKFGASCKYHHPQQEMGSLSPVSLNFYGYPLRQGEKECSYYLKNGQCKFGATCKFHHPEPAGLQFPAPSPVQVAPLPAPMPPAPSVYPPVQSPSAHSSQQYGVILARSPMLSSPYVPSPYGPMLVSPGVVQFPSWNPYQAPMSPVASPSAQPSVGSGQLYGMAQVSPSAPTYAGSYQPMPSAGASSTSQKEHSFPERPGQPECQYYMRTGDCKFGSSCRYHHPPELVNSRSSVVLSQIEHGLTAKLRTFAVSYAAAILASQKARLSLLSLFKYYGAPPCTHFMQRGICKFGPACKFDHSMERLSYSPSASSLADMPVAPYPVGSVVGTLAPSFSSSELRPEHFSGPRMDSNPSRMSSSMSTSSGLAGSTTSRTEMHSHSNVQRSSQSSGLSASSTSSTTSVEGRT 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10642781 10646918 - CmoCh06G014790.1 Cmo06g01479 385041

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01479 511 MobiDBLite consensus disorder prediction 455 511 - -
Cmo06g01479 511 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Cmo06g01479 511 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 305 330 IPR000571 GO:0046872
Cmo06g01479 511 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 119 IPR000571 GO:0046872
Cmo06g01479 511 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 165 IPR000571 GO:0046872
Cmo06g01479 511 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 380 406 IPR000571 GO:0046872
Cmo06g01479 511 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 73 IPR000571 GO:0046872
Cmo06g01479 511 Gene3D - 292 346 - -
Cmo06g01479 511 Gene3D - 42 122 - -
Cmo06g01479 511 MobiDBLite consensus disorder prediction 280 300 - -
Cmo06g01479 511 MobiDBLite consensus disorder prediction 1 20 - -
Cmo06g01479 511 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872
Cmo06g01479 511 ProSiteProfiles Zinc finger C3H1-type profile. 303 331 IPR000571 GO:0046872
Cmo06g01479 511 Gene3D - 123 171 - -
Cmo06g01479 511 MobiDBLite consensus disorder prediction 441 511 - -
Cmo06g01479 511 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Cmo06g01479 511 SMART c3hfinal6 379 406 IPR000571 GO:0046872
Cmo06g01479 511 SMART c3hfinal6 303 330 IPR000571 GO:0046872
Cmo06g01479 511 SMART c3hfinal6 92 119 IPR000571 GO:0046872
Cmo06g01479 511 SMART c3hfinal6 138 165 IPR000571 GO:0046872
Cmo06g01479 511 SUPERFAMILY CCCH zinc finger 307 331 IPR036855 GO:0046872
Cmo06g01479 511 PANTHER PROTEIN PHOSPHATASE RELATED 14 493 - -
Cmo06g01479 511 SUPERFAMILY CCCH zinc finger 95 122 IPR036855 GO:0046872
Cmo06g01479 511 SUPERFAMILY CCCH zinc finger 140 166 IPR036855 GO:0046872
Cmo06g01479 511 ProSiteProfiles Zinc finger C3H1-type profile. 138 166 IPR000571 GO:0046872
Cmo06g01479 511 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58 14 493 - -
Cmo06g01479 511 SUPERFAMILY CCCH zinc finger 48 74 IPR036855 GO:0046872
Cmo06g01479 511 ProSiteProfiles Zinc finger C3H1-type profile. 379 407 IPR000571 GO:0046872
Cmo06g01479 511 MobiDBLite consensus disorder prediction 1 44 - -
Cmo06g01479 511 SUPERFAMILY CCCH zinc finger 378 410 IPR036855 GO:0046872
Cmo06g01479 511 MobiDBLite consensus disorder prediction 280 306 - -
Cmo06g01479 511 Gene3D - 376 427 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01479 - - - mcha:111009281 772.696
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01479 Cmo14g01672 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01479 Cmo-Chr6:10642781 Cmo11g00965 Cmo-Chr11:5082995 1.14E-84 dispersed
Cmo14g01672 Cmo-Chr14:13175212 Cmo06g01479 Cmo-Chr6:10642781 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g338 . Blo12g00022 . . . . . . . . Cma06g01483 Cma14g01634 Car06g01276 Car14g01459 Sed02g1209 Cpe08g00200 Cpe03g01375 Bhi01g00972 Tan10g0977 Cmetu06g2468 . Hepe05g1466 . Lcy11g1433 . . . . . . . Cone14ag0775 Cone15ag0782 . . Lsi05g01521 . . Cme06g00709 . Blo07g00181 . . . Bpe13g00654 . Bma06g01512 . Cmo06g01479 Cmo14g01672 . . . . . . . . . . . . . Cla05g00632 Cam05g0692 Cec05g0702 Cco05g0698 Clacu05g0686 Cmu05g0654 Cre05g0725 . Csa03g01433 Chy06g00673 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003136 3 1 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 2 1 1 1 1 1 4 2 2 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10031 PF00642 zf-CCCH 5.30E-09 CL0537 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01479 Cmo_Chr06 FPKM 27.237783 27.981916 25.164648 26.021355 33.217247 31.241905 32.428017 29.724701 30.649395 31.248571