Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01480 ATGGCCCCGTCAAGAAAGTCCAGAAGTGTTAATAAGCGGCTTTCTTCTGCTAATGAGGCCTCCTCAAGCAAATATGTGGAAGCTCCTAGCAAAGGAAAGCAGAAGAAGAGGAAATTTGCTGACCTGTTAGGGCCTCAATGGAGCAGAGATGAGGTTGAGCAGTTCTATGAAGCATATCGTAAATATGGAAAAGATTGGAAGAAGGTAGCTGCTGCAGTAAGGAACCGTTCTACCGAAATGGTCGAGGCTCTTTTCACCATGAATAGGGCCTATTTATCACTTCCAGAGGGCACTGCTTCAGTTGTTGGGTTAATTGCAATGATGACTGATCATTACAGCGTACTGATGCGTTGTCAGAGAGACAGTGAAAGTGAGCAAGAAAGTAATGAGGATTCGGGAGCAACAAGAAAGCCTCAAAAGCGACTGCGTGGAAAGTCACGAAATAACAACTCAAAGGGATTGGATGCACATTTTGGAGATGCTTCACAATCACAGTCACTTCCAACAAACTATGGCTGCCTGTCATTGTTGAAGAAAAGGCGTTCTGGAATTAAACCTCATGCTGTTGGAAAACGGACTCCGCGCGTCCCTGTATCATATTCATACGATAAAGATAGTAGAGAGAGGATTTTTTCACCTTCCAGGCATACTAGTAAGCTAAAGGTTGATGATCCAAATGATGATGATGTTGCTCATGAGATAGCTTTAGTTTTAACAGAGGCTTCGCAACGCGATGGTTCTCCTCAACTTTCACAAACACCAAATCCGAAAATAGAAGGTCATGTACTTTCACCTATCCGAAATGACAGGATGCGAAGTGAATCAGACATGATGAGTACGAAGTTTCGATGTAGTGAAATGGATGAAGGTGGTTGTGAATTAAGCTTAGGAAGCACTGGAGCTGATAATGCAGACTATGATCAGGGGAAAAATACTCGTGAGATTCAAAGAAAGGGTAAAAGGTACTACGGAAAGAAGGCAGAAGTTGAAGAAAGTATGTATAACCACTTGGATGACATCAAGGAAGCTTGTAGTGGGACTGAAGAGGGGCAAAAGTCAGGCAGTTTGAGGGGAAAACTTGAAACTGAGGATTTTGATGTAAAATCTGTGAGAACCTCTTTTAAAGGCCCAAGGAAGAGAAGTAAGAAAGCTCTATTTGGAGATGAATGCTCGGCGTTTGATGCACTGCAAACTTTAGCTGATTTGTCTTTGATGATGCCAGACACTACTGCTGACACTGAGCCTTCTGCAAAGGTTAAAGAAGAAAATCTTGATGTCATGGACAAGTCTAAAATGAAAGGGAATCATTCAGTTGTGGGAGCTGGAACCTCTGCTTCCAAGACATCTAAGACGGGAAAGGCTTCAGGCAACAATGTTGGTCCTATTCCTGAAGCAGAAGGAATTCAAGGATCCAATAATGGAAATCGTAAAAGGAAACAGAAGTCCTCTCCGTTTAAAATTTCATCTAAAGATGAAGATAGCAATGATTCTCGTGTCAATGACACTCCAAAAACCAAGGCTACAGATGATGGAAAGAGTTCTTTTGGTAAAGTTAAACGGTCCCCTCATAATGCTGGACTGGCAAAATCTAGCAAAATATCAAAACCTCTAGATCATCATTCATCTTCAAGTACTGACCATAAAAGAGAAGATGGTGACTATGCTTTGTCCACAACACAAGTTCCATCAATTAACCCAATCAGCTTGCCTACCAAAATGAGAAGCAGGCGGAAGATGGACCTGCTGAAGTCGCAAAGAGATTCAAAGATTGCTGATAACATTTTGATCGATCAACTTAATGTAACTGCTCATTCATTAGATGATAGACCACATGATCTCAAGGAGCAGCATTCTAATTGCCTATCTTGGCATAAATTGCGAAGATGGTGTGTTTTTGAGTGGCTCTACAGTGCAATTGATTTCCCATGGTTTGCAAAATGTGAGTTTGTAGAGTATTTAAATCACGTTGGATTAGGTCACATTCCTAGATTGACACGTGTTGAATGGGGTGTTATTCGAAGTTCCCTTGGGAGACCGCGGAGATTCTCTGCACAATTCTTGAAGGAAGAAAAACAGAAGCTAAATCAATATAGGGAATCTGTTAGGAAACACTATGCTGAACTTCGTGCAGGCACAAGGGAAGGACTTCCAACCGATTTAGCTCGGCCATTATCTGTTGGACAGCGTGTTATTGCCATTCATCCAAAAACAAGAGAGATCCACGATGGAAGTGTACTTACTGTTGACTATAGCAGGTGTCGTGTTCAGTTTGACCGACCTGAACTTGGAGTTGAATTTGTCATGGATATCGAGTGTATGCCTTTAAATCCAGTTGAAAACATGCCTGCAAATTTGTCAAGACATGGCGTGACTCTCGATAAGATATTTGGTAATCTCAATGAGGTTAAGATTAATGGCTTACTGAAGGAAGCGAAGATTGAAGACTATATAAAATCAACCAGTAACGATAAACTTGAAAGCACTGATGGTTCTGTGTTTATTTCCCCTTCCACTCATCATATCAACAAATTAATTAAACAGGCAAAGTTAGGCCTACACATTATTATTGACCTGCCGGTAAGTGATAAAGGAATTGTTCGTGGCCAGGTCGACCTTGGGTGCTCTAATCTACAAACTAAATTTGGGCTTAATGAGACTGTCGGTATCCAACAGGAGGCAAGTTCCCAACTTTCTGTCCTTGCTCAAATTCAAGCTAAAGAAGCTGATGTTCATGCTCTGTCTGAATTGTCACGTGCACTTGACAAGAAGGAGGTGGTGGTGTCTGAATTGAAGCGCTTGAATGATGAGGTGTTGGAAAACCAAATAAATGGAGACAACTTGCTCAAGGATTCAGAGAACTTTAAGAAGCAATATGCTGCTGTGCTATTACAGTTGAATGAAGTCTCCTCTGCTCTGTATAGCTTGAGGCAGCGCAATACGTATCAAGGGACTTCACCATTGATGTTCCTCAAGCCAGTGCATGATTTGGGTGACCCTTGCTCTCATGCTCAAGAACCCGGTTCCCATGTGGCTGAAATTGTGGGAAGTTCCAGAGCAAAGGCTCAAACAATGATCGATGAAGCAATGCAGGCAATTCTTGCTCTGAAAAAAAGAGAAAGTAATTTGGAGAACATTGAAGAAGCCATTGATTTTGTGAGTAATAAACTCTCAGTAGATGATTTGGCCTTGCCAACTGTGAAATCAACATCTGCAGATACTAGTAATGCCACTCCAGTACCTCAGAATCATTTCAATGTGGGTGCATCAAACCCATCAGCTGCTAATGATATAGTTGGTTCCAAGTCCAATAGCCCATCCGACAAGCCTGAAGTGGAGATCCCTTCAGAACTTATTGCGCACTGTGTAGCCACTTTACTCATGATTCAGAAATGCACAGAACGACAGTTTCCGCCAGCTGATGTTGCTCAGGTACTGGATTCTGCTGTCAATAGTTTGCAGCCATGTTGCCCTCAGAACCTTCCGCTATATGCAGAAATACAGAAATGCATGGGAATTATAAGGAGCCAGATACTTGCGCTTATACCTACATAG 3552 41.98 MAPSRKSRSVNKRLSSANEASSSKYVEAPSKGKQKKRKFADLLGPQWSRDEVEQFYEAYRKYGKDWKKVAAAVRNRSTEMVEALFTMNRAYLSLPEGTASVVGLIAMMTDHYSVLMRCQRDSESEQESNEDSGATRKPQKRLRGKSRNNNSKGLDAHFGDASQSQSLPTNYGCLSLLKKRRSGIKPHAVGKRTPRVPVSYSYDKDSRERIFSPSRHTSKLKVDDPNDDDVAHEIALVLTEASQRDGSPQLSQTPNPKIEGHVLSPIRNDRMRSESDMMSTKFRCSEMDEGGCELSLGSTGADNADYDQGKNTREIQRKGKRYYGKKAEVEESMYNHLDDIKEACSGTEEGQKSGSLRGKLETEDFDVKSVRTSFKGPRKRSKKALFGDECSAFDALQTLADLSLMMPDTTADTEPSAKVKEENLDVMDKSKMKGNHSVVGAGTSASKTSKTGKASGNNVGPIPEAEGIQGSNNGNRKRKQKSSPFKISSKDEDSNDSRVNDTPKTKATDDGKSSFGKVKRSPHNAGLAKSSKISKPLDHHSSSSTDHKREDGDYALSTTQVPSINPISLPTKMRSRRKMDLLKSQRDSKIADNILIDQLNVTAHSLDDRPHDLKEQHSNCLSWHKLRRWCVFEWLYSAIDFPWFAKCEFVEYLNHVGLGHIPRLTRVEWGVIRSSLGRPRRFSAQFLKEEKQKLNQYRESVRKHYAELRAGTREGLPTDLARPLSVGQRVIAIHPKTREIHDGSVLTVDYSRCRVQFDRPELGVEFVMDIECMPLNPVENMPANLSRHGVTLDKIFGNLNEVKINGLLKEAKIEDYIKSTSNDKLESTDGSVFISPSTHHINKLIKQAKLGLHIIIDLPVSDKGIVRGQVDLGCSNLQTKFGLNETVGIQQEASSQLSVLAQIQAKEADVHALSELSRALDKKEVVVSELKRLNDEVLENQINGDNLLKDSENFKKQYAAVLLQLNEVSSALYSLRQRNTYQGTSPLMFLKPVHDLGDPCSHAQEPGSHVAEIVGSSRAKAQTMIDEAMQAILALKKRESNLENIEEAIDFVSNKLSVDDLALPTVKSTSADTSNATPVPQNHFNVGASNPSAANDIVGSKSNSPSDKPEVEIPSELIAHCVATLLMIQKCTERQFPPADVAQVLDSAVNSLQPCCPQNLPLYAEIQKCMGIIRSQILALIPT 1183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10656281 10671382 + CmoCh06G014800.1 Cmo06g01480 385042

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01480 1183 Coils Coil 1018 1055 - -
Cmo06g01480 1183 MobiDBLite consensus disorder prediction 118 165 - -
Cmo06g01480 1183 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 1 1183 IPR028306 -
Cmo06g01480 1183 MobiDBLite consensus disorder prediction 242 261 - -
Cmo06g01480 1183 MobiDBLite consensus disorder prediction 1 37 - -
Cmo06g01480 1183 MobiDBLite consensus disorder prediction 408 558 - -
Cmo06g01480 1183 Pfam DIRP 634 735 IPR033471 -
Cmo06g01480 1183 MobiDBLite consensus disorder prediction 1 28 - -
Cmo06g01480 1183 Coils Coil 913 936 - -
Cmo06g01480 1183 SMART DIRP_2 635 736 IPR033471 -
Cmo06g01480 1183 Coils Coil 687 707 - -
Cmo06g01480 1183 MobiDBLite consensus disorder prediction 437 456 - -
Cmo06g01480 1183 CDD SANT 47 81 IPR001005 -
Cmo06g01480 1183 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 41 81 IPR017930 -
Cmo06g01480 1183 SMART sant 43 91 IPR001005 -
Cmo06g01480 1183 MobiDBLite consensus disorder prediction 414 432 - -
Cmo06g01480 1183 PANTHER LIN-9 1 1183 IPR010561 GO:0006351|GO:0017053
Cmo06g01480 1183 MobiDBLite consensus disorder prediction 242 258 - -
Cmo06g01480 1183 MobiDBLite consensus disorder prediction 118 138 - -
Cmo06g01480 1183 MobiDBLite consensus disorder prediction 533 554 - -
Cmo06g01480 1183 ProSiteProfiles SANT domain profile. 42 79 IPR017884 -
Cmo06g01480 1183 MobiDBLite consensus disorder prediction 484 517 - -
Cmo06g01480 1183 Pfam Myb-like DNA-binding domain 46 81 IPR001005 -
Cmo06g01480 1183 Gene3D - 2 99 - -
Cmo06g01480 1183 SUPERFAMILY Homeodomain-like 42 89 IPR009057 -
Cmo06g01480 1183 MobiDBLite consensus disorder prediction 149 165 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01480 - - - bhj:120080265 2061.96
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01480 Cmo14g01669 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g01083 Cmo-Chr12:9932928 Cmo06g01480 Cmo-Chr6:10656281 2.94E-22 transposed
Cmo14g01669 Cmo-Chr14:13148757 Cmo06g01480 Cmo-Chr6:10656281 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g335 . . . . . Bpe14g01136 . . . . Cma06g01485 Cma14g01632 Car06g01277 Car14g01458 . Cpe08g00199 Cpe03g01374 Bhi01g00974 . . . Hepe05g1463 . . . . . . . . . . . Cone7ag0162 Cone4ag0158 Lsi05g01524 . . Cme06g00712 Blo02g00515 . Bda11g00533 Bda13g00178 . Bpe13g00656 . Bma06g01509 . Cmo06g01480 Cmo14g01669 . . . . . . . . . . . . . Cla05g00634 Cam05g0695 Cec05g0708 Cco05g0704 Clacu05g0690 Cmu05g0657 Cre05g0729 . Csa03g01442 Chy06g00683 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003565 1 5 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 4 1 2 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10032 PF06584 DIRP 2.40E-29 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01480 Cmo_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0