Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01492 ATGCTTCAAGAAGCTTCAACAAAAGCCGAGGGAGAACTTGAAGTTAGCTTTGGTTATAAATGCAATGATAACATAGATGGAATTGAGGTTTCCGACAAATTCGAGATCCAGCCTGGACTTCGAAGGATCAGCAGTTTCTCTTGCTTATCTGGGGCTGCTTTGAGTGCAAATGCAACCTTAGCTAACACAAATATATGCAATGGGTTGATAGGAGTAGAAATACTTCCGACCTGGGACTCTCCTAACTCCTTCCGTAAGGTGCCCTCATCACCTACTCTTTCAAGGTTGGATATATTGTCAACGTCTCTGCAGAGTAGTCTGTCAAACTTAAGTTGCAGTCCATCTACCCCAACATCTGAATATGATTCATGCTTGTTAAAGTCCACGAGTGCTCCTTCCGGAAGTGATGGTTTTCTTAATGTTAAGGAATTGCAAGTGGCAGGTGGAGCTGCTGGTGAGGACAGGGTCCAAGCTGTTTGTTCCGAAGAAAATGGATGGCTGTTTTGTGCAATTTATGATGGTTTTAATGGAAGAGATGCAGCTGATTTTCTTGCTGGGACATTGTATGAAACCATCGTATTTTATTTTAGCCTACTAGATTGGGGTGCCAAGAGTGAAACCTCGGATATTTTGGACATGGATAATTCACATCTTGATGATAGTAGCATTACTCAGGGAAGTTTTTCTACTTTGAGAAACAATAGTAAAAGTGCTTCAGGAATCAACAATATATCTGAGAAACGTTCACATGCCAAAGCAGGAATGGCAAACTATCCTCTAAGGCATGGGGTGCTAGATAGCCTCCAGCGTGCTCTTAGTCAAACAGAGAATGATTTTCTGCACATGGTTGAACAGGAAATGGAGGATCGTCCTGATTTAGTTTCTGTTGGATCTTGTGTTTTAGTTGTTCTTCTTCATGGAAAGGATTTATATACATTAAATTTGGGTGATAGTAGAGCAGTACTGGCTACTCTTGATGAAGGTGCAATGAGAGGGAATAGGGGACTGAAAGCTGTCCAGCTCACTCAGAGTCACACTGTGGATAATGCACTTGAAAGAGCGAAGTTACAATATGATCATCCTGATGATCCCACAATCATTGTTGGTGGGAAAGTCAAAGGAAAACTGAAGGTGACTCGTGCTTTTGGAGTTGGCTACTTGAAGACGAAAAAGTTTAATGATGCTTTGATGGGTATTCTTCGAGTTCGTAACCTAATAAGCCCTCCCTATATTTCTACTCAACCGGCATTGTCTGTCCATAGGATATCAAAATCAGATTGCTTTGTAATAGTTGGCAGTGATGGTTTATTTGACTTTTTTGGCAATGACGAGGCAGTGAACCTTGTCCATTCATATATCTTGAGCAACCCAACTGGTGATCCTGCAAAATATTTACTGGAGCAGCTCTTATTGAAAGCTGCTGATTGCGCAGGTTTTAGCAAGGAAGAATTAATTACCATTCCAGCCGGAAGAAGAAGGAAATATCACGATGATGTAACTGTTATTGTAATCATCCTTGGAACAAATCAGCGCACCACAAGGGCATCTACTAGCATGTAA 1560 41.28 MLQEASTKAEGELEVSFGYKCNDNIDGIEVSDKFEIQPGLRRISSFSCLSGAALSANATLANTNICNGLIGVEILPTWDSPNSFRKVPSSPTLSRLDILSTSLQSSLSNLSCSPSTPTSEYDSCLLKSTSAPSGSDGFLNVKELQVAGGAAGEDRVQAVCSEENGWLFCAIYDGFNGRDAADFLAGTLYETIVFYFSLLDWGAKSETSDILDMDNSHLDDSSITQGSFSTLRNNSKSASGINNISEKRSHAKAGMANYPLRHGVLDSLQRALSQTENDFLHMVEQEMEDRPDLVSVGSCVLVVLLHGKDLYTLNLGDSRAVLATLDEGAMRGNRGLKAVQLTQSHTVDNALERAKLQYDHPDDPTIIVGGKVKGKLKVTRAFGVGYLKTKKFNDALMGILRVRNLISPPYISTQPALSVHRISKSDCFVIVGSDGLFDFFGNDEAVNLVHSYILSNPTGDPAKYLLEQLLLKAADCAGFSKEELITIPAGRRRKYHDDVTVIVIILGTNQRTTRASTSM 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10725568 10728954 - CmoCh06G014920.1 Cmo06g01492 385054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01492 519 Pfam Protein phosphatase 2C 268 456 IPR001932 -
Cmo06g01492 519 PANTHER PROTEIN PHOSPHATASE 2C 40-RELATED 3 518 - -
Cmo06g01492 519 SMART PP2C_4 132 504 IPR001932 -
Cmo06g01492 519 SUPERFAMILY PP2C-like 152 507 IPR036457 -
Cmo06g01492 519 Gene3D - 118 515 IPR036457 -
Cmo06g01492 519 ProSiteProfiles PPM-type phosphatase domain profile. 138 506 IPR001932 -
Cmo06g01492 519 PANTHER PROTEIN PHOSPHATASE 2C 3 518 IPR015655 GO:0004722|GO:0006470
Cmo06g01492 519 CDD PP2Cc 151 506 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01492 Cmo-Chr6:10725568 Cmo20g00446 Cmo-Chr20:2072912 1.67E-78 dispersed
Cmo14g01659 Cmo-Chr14:13103837 Cmo06g01492 Cmo-Chr6:10725568 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01492 - - csv:101202885 889.026