Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01513 ATGGCATATGATGGCGGTGGATGCAAGATCAATAAGACTGCTGCCCTGGTTGGTTTGTTATCTCTGTTTGTAGTTGCGATGGTCACTGGTGTCAATGGCGCGGAAGAGCACTCTGAGAGCTCCGGCGCCATTAAGACTCTTTGTGAACCCACTGATTATCGCCAGACTTGCGAGGAAGCCTTGGCGAAGTCCAAAACGGACTCAGAAGACCCACGTGAGCTAATCAAGGCAAGCTTCCATTACGTAGTTGAGCAGATCAAATCCGCCATTAAAAATTCCACAACCCTGAAAGAAACTGCCAAGGACCCCATGGCCAAGAAGGCGCTTGACGATTGCAGTGAACTCATGGATTACGCCATTGACGATCTTCTATTATCCTTTGATAAAATCACTGAGACTTTTGATTTTAGTAAAATGGATGATTACATTGAGGATCTTAGGATTTGGTTGAGTGGTGCATTGACTTATCAGGTAACTTGCTTAGATGGGTTTGAGAATGTTACTGGTGATACGGGTGAAAAGATGAAGCACTTGTTGAAGATGTCACAAGAAATGACTGCCAATGCGATTGAGATGGTCGGTGAAGTTAAATCCGCTGTGAGCTCCTTATGGGAAAGCTTCGGACTGCCACCATTGGGACGAGAACTACGAACAGCGGAATCCAAGGAAGAGGAGGAAGTGCCATCTTGGGTCAACGACAGACGGGGGCTACTCCAAACCACCGGAGCCAATGTCAAGGCGGATGTAGTGGTGGCTAAAGACGGAAGTGGAAAGTACAAGACAATAACCGAAGCCCTTCAAGAGGTCCCAAAGAAGAGCAATACAACCTTTATCATTTATATCAAGGAAGGAGTTTACGAAGAGCAAGTGAAGGTTGACAAAAAAATGACCTATGTCATGATGATCGGAGATGGCCCGACTAAGACCAAGATCACTGCTAGAGAAAACTTTGCTGATGGAACATCTACATTCAAAACTGCTACCGTTTCGGTGATTGGAACCAACTTCATCGGAAAAGATTTGTGGTTCGAGAACTCAGCTGGGGCTGCAAAGCACCAAGCTGTTGCACTCCGAGTTCAATCTGACATGTCAATCTTCTATAACTGTCGAATGGACGGCTATCAAGATACTCTCTACACTCATGCCCACCGTCAGTTCTATCGAGACTGCACCATCACTGGCACCATCGACTTCATTTTTGGCAACGCCGCCGTCGTGTTACAAAATTGCAAGATCTTCGTGAGGAAGCCATTGGAAAATCAAAAATGCATTGTCACAGCCCAAGGCCGAACCCAAAAGAAAGAGCCCACTGCTATTATCCTCCAGAACTGCGTCATCTCTTCCGATCCTGACTACTTCCCTGTCCGCCATATCAACAAGGCCTATCTTGGTCGTCCATGGAAGGAATATTCAAGAACTATCATCATGGAATCTCAAATTGACGACTTGATCCAACCTGAAGGGTGGCTTCCATGGATGGGAAATTTTGCTCTTAACACTCTATTTTACTCAGAGTTCAATAATAGGGGACCTGGTGCATCAACGAAAAATCGAGTCAAGTGGAGGGGAATTAAACAGATCACAGCGAAACATGCCCTTGATTTCACTCCTGCATTGTTTATTCGTGGCAATCCCTGGATCAAGCCCACCGGAGTTCCATATAGTTCAGGCATGATGAACCCCTAG 1686 45.91 MAYDGGGCKINKTAALVGLLSLFVVAMVTGVNGAEEHSESSGAIKTLCEPTDYRQTCEEALAKSKTDSEDPRELIKASFHYVVEQIKSAIKNSTTLKETAKDPMAKKALDDCSELMDYAIDDLLLSFDKITETFDFSKMDDYIEDLRIWLSGALTYQVTCLDGFENVTGDTGEKMKHLLKMSQEMTANAIEMVGEVKSAVSSLWESFGLPPLGRELRTAESKEEEEVPSWVNDRRGLLQTTGANVKADVVVAKDGSGKYKTITEALQEVPKKSNTTFIIYIKEGVYEEQVKVDKKMTYVMMIGDGPTKTKITARENFADGTSTFKTATVSVIGTNFIGKDLWFENSAGAAKHQAVALRVQSDMSIFYNCRMDGYQDTLYTHAHRQFYRDCTITGTIDFIFGNAAVVLQNCKIFVRKPLENQKCIVTAQGRTQKKEPTAIILQNCVISSDPDYFPVRHINKAYLGRPWKEYSRTIIMESQIDDLIQPEGWLPWMGNFALNTLFYSEFNNRGPGASTKNRVKWRGIKQITAKHALDFTPALFIRGNPWIKPTGVPYSSGMMNP 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10795720 10797520 - CmoCh06G015130.1 Cmo06g01513 385075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01513 561 CDD PMEI-like_3 46 193 - -
Cmo06g01513 561 TIGRFAM PME_inhib: pectinesterase inhibitor domain 20 189 IPR006501 GO:0004857
Cmo06g01513 561 Pfam Pectinesterase 248 544 IPR000070 GO:0030599|GO:0042545
Cmo06g01513 561 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 194 IPR035513 -
Cmo06g01513 561 Gene3D - 242 558 IPR012334 -
Cmo06g01513 561 Pfam Plant invertase/pectin methylesterase inhibitor 43 189 IPR006501 GO:0004857
Cmo06g01513 561 ProSitePatterns Pectinesterase signature 2. 392 401 IPR033131 -
Cmo06g01513 561 Gene3D Invertase/pectin methylesterase inhibitor family protein 39 197 IPR035513 -
Cmo06g01513 561 PANTHER PECTINESTERASE 21 559 - -
Cmo06g01513 561 PANTHER PECTINESTERASE 21 559 - -
Cmo06g01513 561 SUPERFAMILY Pectin lyase-like 245 557 IPR011050 -
Cmo06g01513 561 SMART PMEI_2 39 192 IPR006501 GO:0004857
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g01513 Cmo08g01213 CCT
Cmo06g01513 Cmo17g00328 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01513 Cmo-Chr6:10795720 Cmo06g01517 Cmo-Chr6:10806270 0 dispersed
Cmo08g01213 Cmo-Chr8:7701057 Cmo06g01513 Cmo-Chr6:10795720 0 dispersed
Cmo14g01648 Cmo-Chr14:13035160 Cmo06g01513 Cmo-Chr6:10795720 0 dispersed
Cmo17g00328 Cmo-Chr17:1985349 Cmo06g01513 Cmo-Chr6:10795720 0 dispersed
Cmo06g01513 Cmo-Chr6:10795720 Cmo06g01515 Cmo-Chr6:10799981 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01513 K01051 - csv:101212686 839.336