Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01515 ATGGCATATGATGGCGGTGGATGCAAGATCAATAAGGTTGCTGCCCTGGTTGGGTTGTTATCTCTGTTTGTAGTTGCGATGGTTAATGGTGTCAATGGCGCAGAAGAGCACTCTGAGAGCTCTAGCGCCATTAAGACTCTTTGTGAACCCACTGATTATCGCCAGACTTGCGAGGAGGCCTTGGTGAAGTCCAAAACGGACTCACAAGACCCACGTGAACTAATCAAGGCAGGATTCCATTACGTAGTTGAGCAGATTAAATCTGCCATTACAAATTCCAAAACCTTGAAAGAAACTGCTAGTGACCCCATGGCCAAGAAGGCGCTTGACGATTGTAGCGAACTCATGGATTATGCAATTGACGATCTTTTATTATCGTTTGATAAGATTACTGAGACTTTTGATTTCAGTAAAATGGATGATTACATTGAGGATCTTAGGATTTGGTTGAGTGGTGCATTGACGTATCAGGTTACTTGTTTGGATGGGTTTGAGAATGTTACGGGTGATACGGGTGAAAAGATGAAGCACTTGTTGAAGTTGTCACAAGAAATGACCGCCAATGCGCTTGAGATGGTGGGTGAAGTTAAATCCGTTGTGAGCTCCTTATGGGAAGGCTTGGGGCTGCCACCATTGGGACGAGAACTGCGAACAAAGGAATCCGAGGAAGAGGAGGAAGTGCCATCTTGGGTCAACGACAGACGGGGGCTACTCCAAGCCACCGGAGCCAATGTCAAGGCAGATGCGGTGGTGGCTAAGGATGGAAGTGGAAAGTACAAGACAATCACCGAAGCCATTCGAGATGTCCCAAAGAAGAGCAATAAAACCTTTGTCATTTATATCAAGGAAGGAGTTTATGAAGAGCAAGTAATGGTCGACAAAAAGACAACCTATGTCATGATGATCGGAGATGGCCCGACTAAGACCAAGATCACTGCTAGAGAAAACTTTGCTGATGGAACATCCACATTCAAAACTGCTACTGTTTCGGTGATTGGAACCAACTTCATCGGAAAAGATTTGTGGTTCGAGAACTCAGCTGGGGCTGCAAAGCACCAAGCTGTTGCACTCCGAGTTCAATCTGACATGTCAATCTTCTATAACTGTCGAATGGACGGCTATCAAGATACTCTCTACACTCATGCCCACCGTCAGTTCTATCGAGACTGCACCATCACTGGCACCATCGACTTCATTTTTGGCAACGCCGCCGTCGTGTTACAAAATTGCAAGATCTTCGTGAGGAAGCCATTGGAAAATCAAAAATGCATTGTCACAGCCCAAGGCCGAACCCAAAAGAAAGAGCCCACTGCTATTATCCTCCAGAACTGCGTCATCTCTTCCGACCCCGACTACTTCCCTGTCCGCCATATCAACAAGGCCTATCTTGGTCGTCCATGGAAGGAATATTCAAGAACTATCATCATGGAATCTCAAATTGACGACTTGATCCAACCTGAAGGGTGGCTTCCATGGATGGGAAATTTTGCTCTCAACACTCTATTTTACTCGGAGTTCAATAATAGGGGACCTGGTGCATCAACGAAAGATCGAGTCAAGTGGAAGGGAATTAAACAGATCACAGCGAAGCATGCCCTTGATTTTACTCCTGCGTTGTTTATTCGTGGTAATCCCTGGATTAAGCCCACCGGAGTTCCATACAGTTCAGGCATGATGAACCCCTAG 1686 45.91 MAYDGGGCKINKVAALVGLLSLFVVAMVNGVNGAEEHSESSSAIKTLCEPTDYRQTCEEALVKSKTDSQDPRELIKAGFHYVVEQIKSAITNSKTLKETASDPMAKKALDDCSELMDYAIDDLLLSFDKITETFDFSKMDDYIEDLRIWLSGALTYQVTCLDGFENVTGDTGEKMKHLLKLSQEMTANALEMVGEVKSVVSSLWEGLGLPPLGRELRTKESEEEEEVPSWVNDRRGLLQATGANVKADAVVAKDGSGKYKTITEAIRDVPKKSNKTFVIYIKEGVYEEQVMVDKKTTYVMMIGDGPTKTKITARENFADGTSTFKTATVSVIGTNFIGKDLWFENSAGAAKHQAVALRVQSDMSIFYNCRMDGYQDTLYTHAHRQFYRDCTITGTIDFIFGNAAVVLQNCKIFVRKPLENQKCIVTAQGRTQKKEPTAIILQNCVISSDPDYFPVRHINKAYLGRPWKEYSRTIIMESQIDDLIQPEGWLPWMGNFALNTLFYSEFNNRGPGASTKDRVKWKGIKQITAKHALDFTPALFIRGNPWIKPTGVPYSSGMMNP 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10799981 10801763 - CmoCh06G015150.1 Cmo06g01515 385077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01515 561 CDD PMEI-like_3 46 193 - -
Cmo06g01515 561 Pfam Plant invertase/pectin methylesterase inhibitor 43 191 IPR006501 GO:0004857
Cmo06g01515 561 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 197 IPR035513 -
Cmo06g01515 561 PANTHER PECTINESTERASE 19 559 - -
Cmo06g01515 561 Gene3D - 242 558 IPR012334 -
Cmo06g01515 561 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 194 IPR035513 -
Cmo06g01515 561 SMART PMEI_2 39 192 IPR006501 GO:0004857
Cmo06g01515 561 SUPERFAMILY Pectin lyase-like 245 557 IPR011050 -
Cmo06g01515 561 ProSitePatterns Pectinesterase signature 2. 392 401 IPR033131 -
Cmo06g01515 561 PANTHER PECTINESTERASE 19 559 - -
Cmo06g01515 561 Pfam Pectinesterase 248 544 IPR000070 GO:0030599|GO:0042545
Cmo06g01515 561 TIGRFAM PME_inhib: pectinesterase inhibitor domain 20 190 IPR006501 GO:0004857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01515 Cmo-Chr6:10799981 Cmo06g01517 Cmo-Chr6:10806270 0 dispersed
Cmo06g01513 Cmo-Chr6:10795720 Cmo06g01515 Cmo-Chr6:10799981 0 proximal
Cmo06g01515 Cmo-Chr6:10799981 Cmo06g01516 Cmo-Chr6:10803307 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01515 K01051 - csv:101212686 835.484