Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01516 ATGGCATGCAACAACAAGAAGGCTGCTCTGGTTGGCTTGTTATCTCTGGTCCTAGTTGCCATGGTTAACGGTGTGAGTGGCTCGGAAGAAGAGATTAAGACTCTGTGTGAACCTACTGATTACCGTGAAACTTGCGAGCAAGCCTTGGTGAATTCACATACTGACTCGGAAGACCCACGTGAGTTAATGAAGGCAGGATTCCATGCTGCCATTGAGAATCTCAAATCGGTTATTGGAAATTCCATCACTATGAAAGAAGCTTCCTCTGACCCTATGGTGAAGAAGGCACTTGATGATTGCAACGAGCTCATGGATTATGCAATTGATGATCTTTTATTATCGTATGATAAAATCACCGCTAATTTTGATTACAATAAAGTGAATGATTATACTGAGAATCTTAAGATTTGGTTGAGTGGTGCATTGACGTATCAAGATACTTGTTTGGACGGGTTTGAGAATGTTACTGGTGATACTGGTGAAAAGATGCAGAATTTGTTGAAGATACCGAAGGAAATGACCACTAATGGGATTGGGATGGTGGGTGAGCTTACATCCATTGTCAGCTCTCTTTGGGAAGGGTTGGGGCTGCCATCGATAGGGCTAGGGCGAGTGCTTGAAGAAGAGGAAGAGCCATCTTGGGTCAATGACAGACGGGGGCTACTCCAATCTATTGGGGCCAACATCAAAGCGGATGTGGTAGTGGCTAAAGATGGAAGTGGAAAGTACAAGACAATAACGGAAGCCCTTCAAGAGGTCCCAAAGAAGAGCAATACAACCTTTATCATTTATATCAAGGAAGGAGTTTACGAAGAGCAAGTAATGGTCGACAAAAAAATGACCTATGTCATGATGATTGGAGATGGCCCGACTAAGACCAAGATCACTGCTAGAGAAAACTTTGTTGATGGAACATCCACATTCAAAACTGCTACTGTTTCGGTGATTGGAACCAACTTCATCGGAAAAGACTTGTGGTTCGAGAACTCAGCTGGGGCTATAAAGCACCAAGCTGTTGCACTCCGAGTTCAATCTGACATGTCAATCTTCTATAACTGTCGAATGGACGGCTATCAAGATACTCTCTACACTCATGCCCACCGTCAATTCTATCGAGACTGCACCATCACTGGCACCATCGACTTCATTTTTGGCAACGCCGCCGTCGTGTTCCAAAATTGTAAGATCTTCGTGAGGAAGCCATTGGAAAATCAAAAATGCATTGTCACCGCCCAAGGTCGAACCGAGAAGAAAGAGCCTACCGGTATAGTCCTCCAAAACTGCGTCATCTCTTCCGACCCTGACTACTTTCCCGTCCGCCATATCAACAAGGCCTACCTTGGCCGCCCATGGAAGCAATATTCAAGAACCATTATCATGCAATCCCAAATCGATGACTTGATCCAGCCCGAAGGGTGGCTTCCATGGATGGACGATTTTGCTCTCAATACTCTATTTTACTCCGAGTTCGAAAATAGAGGACCCGGCGCAGCAACCCAAAATCGAGTCAAATGGAGGGGAGTTAAACAAATTACAGCAAAACACGCCCTTGATTTCACTCCTGGATTGTTTATTCGTGGTAATCCTTGGATCAAGCACACTGGAGTACCGTACACTTCCGGCATGATGGCAGTGTAA 1638 44.93 MACNNKKAALVGLLSLVLVAMVNGVSGSEEEIKTLCEPTDYRETCEQALVNSHTDSEDPRELMKAGFHAAIENLKSVIGNSITMKEASSDPMVKKALDDCNELMDYAIDDLLLSYDKITANFDYNKVNDYTENLKIWLSGALTYQDTCLDGFENVTGDTGEKMQNLLKIPKEMTTNGIGMVGELTSIVSSLWEGLGLPSIGLGRVLEEEEEPSWVNDRRGLLQSIGANIKADVVVAKDGSGKYKTITEALQEVPKKSNTTFIIYIKEGVYEEQVMVDKKMTYVMMIGDGPTKTKITARENFVDGTSTFKTATVSVIGTNFIGKDLWFENSAGAIKHQAVALRVQSDMSIFYNCRMDGYQDTLYTHAHRQFYRDCTITGTIDFIFGNAAVVFQNCKIFVRKPLENQKCIVTAQGRTEKKEPTGIVLQNCVISSDPDYFPVRHINKAYLGRPWKQYSRTIIMQSQIDDLIQPEGWLPWMDDFALNTLFYSEFENRGPGAATQNRVKWRGVKQITAKHALDFTPGLFIRGNPWIKHTGVPYTSGMMAV 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10803307 10805041 - CmoCh06G015160.1 Cmo06g01516 385078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01516 545 CDD PMEI-like_3 34 186 - -
Cmo06g01516 545 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 185 IPR035513 -
Cmo06g01516 545 Gene3D - 226 542 IPR012334 -
Cmo06g01516 545 SMART PMEI_2 27 191 IPR006501 GO:0004857
Cmo06g01516 545 Pfam Plant invertase/pectin methylesterase inhibitor 32 165 IPR006501 GO:0004857
Cmo06g01516 545 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 186 IPR035513 -
Cmo06g01516 545 Pfam Pectinesterase 232 528 IPR000070 GO:0030599|GO:0042545
Cmo06g01516 545 ProSitePatterns Pectinesterase signature 2. 376 385 IPR033131 -
Cmo06g01516 545 TIGRFAM PME_inhib: pectinesterase inhibitor domain 13 165 IPR006501 GO:0004857
Cmo06g01516 545 PANTHER PECTINESTERASE 16 543 - -
Cmo06g01516 545 PANTHER PECTINESTERASE 16 543 - -
Cmo06g01516 545 SUPERFAMILY Pectin lyase-like 229 541 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01516 Cmo-Chr6:10803307 Cmo06g01534 Cmo-Chr6:10858549 0 dispersed
Cmo06g01515 Cmo-Chr6:10799981 Cmo06g01516 Cmo-Chr6:10803307 0 tandem
Cmo06g01516 Cmo-Chr6:10803307 Cmo06g01517 Cmo-Chr6:10806270 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01516 K01051 - csv:101212686 821.231