Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01517 ATGGTTAATGGTGTCAATGGCGCAGAAGAGCACTCTGAGAGCTCTAGCGCCATTAAGACTCTTTGTGAACCCACTGATTATCGCCAGACTTGTGAGGAAGCCTTGGCGAAGTCCAAAACGGACTCAGAAGACCCACGTGAGCTAATCAAGGCAGGATTCCATTACGTAGTTGAGCAGATCAAATCCGCCATTACAAATTCCAAAACCCTGAAAGAAACTGCGAGTGACCCCATGGCCAAGAAGGCGCTTGATGATTGCAGTGAACTCATGGATTATGCAGTTGACGATCTTTTATTATCGTTTGATAAGATCACCGAGACTTTTGATTTTAGTAAAATGGATGATTACATTGAGGATCTTAGGATTTGGTTGAGTGGTGCATTGACGTATCAGGTTACTTGTTTGGATGGGTTTGAGAACGTTACTGGTGATACGGGTGAAAAGATGAAGCACTTGTTGAAGTTGTCACAAGAAATGACCGTCAATGCGCTTGAGATGGTGGGTGAAGTTAAATCCGTTGTGAGCTCCTTATGGGAAGGCTTGGGGCTGCCACCATTGGGACGAGAACTGCGAACAAAGGGATCCGAGGAAGAGGAGGAACTGCCATCTTGGGTCAACGACAGACGGGGTCTACTCCAAGCCACCGGAGCCAATGTTAAGGCGGATGCAGTGGTGGCTAAGGATGGAAGTGGAAAGTACAAGACAATCACTGAAGCCATTCGAGATGTCCCAAAGAAGAGCAATAAAACCTTTGTCATTTATATCAAGGAAGGAGTATATGAAGAGCAAGTAATGGTCGACAAAAAGACAACCTATGTCATGATGATCGGAGATGGCCCGACTAAGACCAAGATCACTGCTAGAGAAAACTTTGCTGATGGAACATCCACATTCAAAACTGCTACCGTTTCGGTGATCGGAACCAACTTCATCGGAAAAGATTTGTGGTTCGAGAACTCAGCTGGGGCTGCAAAGCACCAAGCTGTTGCACTTCGAGTTCAATCTGACATGTCAATCTTCTATAACTGTCGAATGGACGGCTATCAAGATACTCTCTACACTCATGCCCACCGTCAGTTCTATCGAGACTGCACCATCACTGGCACCATAGACTTCATTTTTGGCAACGCCGCCGTCGTGTTACAAAATTGCAAGATCTTCGTGAGGAAGCCATTGGAAAATCAAAAATGCATTGTCACAGCCCAAGGCCGAACCCAAAAGAAAGAGCCCACTGCTATTATCCTCCAAAACTGCGTCATTTCTTCCGACCCCGAATACTTCCCTGTCCGCCATATCAACAAGGCCTATCTTGGTCGTCCATGGAAAGCATATTCAAGAACTATCATCATGGAATCTCAAATTGACGACTTGATCCAACCTGAAGGGTGGCTTCCATGGATGGGAAATTTTGCTCTCAATACTCTATTTTACTCGGAGTTCAATAATAGGGGACCTGGTGCATCAACGAAAGATCGAGTCAAGTGGAAAGGAATTAAACAGATCACAGCGAAGCATGCCCTTGATTTTACTCCTGCATTGTTTATTCGTGGTAATCCCTGGATTAAGCCCACCGGAGTTCCATACAGTTCAGGCATGATGAACCCCTAG 1608 45.58 MVNGVNGAEEHSESSSAIKTLCEPTDYRQTCEEALAKSKTDSEDPRELIKAGFHYVVEQIKSAITNSKTLKETASDPMAKKALDDCSELMDYAVDDLLLSFDKITETFDFSKMDDYIEDLRIWLSGALTYQVTCLDGFENVTGDTGEKMKHLLKLSQEMTVNALEMVGEVKSVVSSLWEGLGLPPLGRELRTKGSEEEEELPSWVNDRRGLLQATGANVKADAVVAKDGSGKYKTITEAIRDVPKKSNKTFVIYIKEGVYEEQVMVDKKTTYVMMIGDGPTKTKITARENFADGTSTFKTATVSVIGTNFIGKDLWFENSAGAAKHQAVALRVQSDMSIFYNCRMDGYQDTLYTHAHRQFYRDCTITGTIDFIFGNAAVVLQNCKIFVRKPLENQKCIVTAQGRTQKKEPTAIILQNCVISSDPEYFPVRHINKAYLGRPWKAYSRTIIMESQIDDLIQPEGWLPWMGNFALNTLFYSEFNNRGPGASTKDRVKWKGIKQITAKHALDFTPALFIRGNPWIKPTGVPYSSGMMNP 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10806270 10807974 - CmoCh06G015170.1 Cmo06g01517 385079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01517 535 CDD PMEI-like_3 20 167 - -
Cmo06g01517 535 Pfam Pectinesterase 222 518 IPR000070 GO:0030599|GO:0042545
Cmo06g01517 535 Gene3D Invertase/pectin methylesterase inhibitor family protein 12 171 IPR035513 -
Cmo06g01517 535 Pfam Plant invertase/pectin methylesterase inhibitor 17 165 IPR006501 GO:0004857
Cmo06g01517 535 SMART PMEI_2 13 166 IPR006501 GO:0004857
Cmo06g01517 535 TIGRFAM PME_inhib: pectinesterase inhibitor domain 13 163 IPR006501 GO:0004857
Cmo06g01517 535 Gene3D - 216 532 IPR012334 -
Cmo06g01517 535 PANTHER PECTINESTERASE 9 533 - -
Cmo06g01517 535 SUPERFAMILY Pectin lyase-like 219 531 IPR011050 -
Cmo06g01517 535 ProSitePatterns Pectinesterase signature 2. 366 375 IPR033131 -
Cmo06g01517 535 PANTHER PECTINESTERASE 9 533 - -
Cmo06g01517 535 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 16 168 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01513 Cmo-Chr6:10795720 Cmo06g01517 Cmo-Chr6:10806270 0 dispersed
Cmo06g01515 Cmo-Chr6:10799981 Cmo06g01517 Cmo-Chr6:10806270 0 dispersed
Cmo06g01517 Cmo-Chr6:10806270 Cmo06g01534 Cmo-Chr6:10858549 0 dispersed
Cmo06g01516 Cmo-Chr6:10803307 Cmo06g01517 Cmo-Chr6:10806270 0 tandem
Cmo06g01517 Cmo-Chr6:10806270 Cmo06g01518 Cmo-Chr6:10808621 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01517 K01051 - csv:101212686 828.165