Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01518 ATGGCGTCTGATGGCTGTGGATGCAAGAACAATAAGGTTGCCTTGGTTGGGTTGTTGTCTCTATTTTTGGTTGCCTTGGTTAATGGTGTAAGTGGCGGAGGAGAGGACCCTGGCTCCTCTAATGCTGCCATTAAGACTCTATGTGAGCCCACTACTTACCGTGAAACTTGTGAAGAAGCCTTGGTGAAGTCCAATGTTGACTCAAAGGACCCACGTGAGTTAATCAAGGCAGGATTCCATTTTGCCATTGAGCAACTCAAAGTGGCCCTACAAAATTCCCCAACTTTGAGAGCAGCCGCTGCTGACCCCATGGCGCAAAAAGCAGTTGATGCTTGCGACGAGCTAATGGATTATGCAATTGATGATCTTTTAATTACGATTTGGTTGAGCGGTGCATTGACATATCAAGAAACTTGTTTGGATGGTTTCGAGAATGTTCCTGGCGATACTGGTGAAAAGATGAAGAATTTGTTGAAGACGTCAAAAGAAATGACCGCTAATGGGCTTGTGATGGCCCTAGGACTTTCAAAGGGGCGACAACTTCGAACAGATGAATCCAGTGAAGAATTCCAAGACGAAGAGCCATCTTGGGTCAATGACAAGCGAGGGCTGCTTGAAGCCACTGGAGCTAACATCAAGGCGGATGTGGTGGTGGCTAAAGATGGAAGTGGAAAGTACACGACAATAACTGAAGCCCTTCAAGAGGTCCCAAAGAAGAGCAATACAACCTTTGTAATTTATGTGAAGGAAGGAGTTTATGAAGAGCAAGTGATGGTGGACAAAACAATGACCTATGTCATGATGATTGGAGACGGCCCGACTAAGACCAAGATCACAGCTAGCGCGAATGTCATTGATGGAACACCCACATTCAAAAGTGCTACATTTGCGGCGGTCGGAACCAACTTCATCGGAAAAGACTTGTGGTTCGAGAACTCAGCTGGGCCTGAGAAACACCAAGCTGTGGCACTCCGAGTTCAATCTGACATGTCAATCTTCTACAATTGTAGAATGGACGGCTATCAAGATACTCTCTACACCCATGCTCATCGTCAATTCTTCCGAGATTGCACCATCACTGGTACCGTTGATTTCATCTTTGGCAATGCTGCTGTTGTGTTACAGAACTGTAAGATCTTCGTGAGGAAGCCAATGAAGGGTCAAACATGCCTTGTCACCGCCCAAGGCCGAACCCAGAGAAAAGAACCCACCGGTATTGTCCTCCAAAACTGCCAAATCTCTTCCGACCCTGACTACTACCCCGTTCGCCATACCATTAAGTCCTTCCTTGGTCGCCCATGGAAGCTGTATTCTAGAACCGTGGTGATGCAAAGTCAAATCGACGACTTGATCCAGCCTGAAGGGTGGCTTGCTTGGGAGGGCACTTTTGCTCTCAAGACTTTGTTTTACGCAGAGTTCGATAATAGAGGACCTGGTGCAGCAACACAAAATCGAGTGACGTGGAGGGGAATTAAACAAATCACAGCCGACCACGCCACTAAGTTTGCCCCTGGGTTGTTTATTGGTGGTAATCAATGGGTCAAACCGACCGGAATTCCGTACAGTGGTGGGTTGATGACTATCTAA 1587 46.94 MASDGCGCKNNKVALVGLLSLFLVALVNGVSGGGEDPGSSNAAIKTLCEPTTYRETCEEALVKSNVDSKDPRELIKAGFHFAIEQLKVALQNSPTLRAAAADPMAQKAVDACDELMDYAIDDLLITIWLSGALTYQETCLDGFENVPGDTGEKMKNLLKTSKEMTANGLVMALGLSKGRQLRTDESSEEFQDEEPSWVNDKRGLLEATGANIKADVVVAKDGSGKYTTITEALQEVPKKSNTTFVIYVKEGVYEEQVMVDKTMTYVMMIGDGPTKTKITASANVIDGTPTFKSATFAAVGTNFIGKDLWFENSAGPEKHQAVALRVQSDMSIFYNCRMDGYQDTLYTHAHRQFFRDCTITGTVDFIFGNAAVVLQNCKIFVRKPMKGQTCLVTAQGRTQRKEPTGIVLQNCQISSDPDYYPVRHTIKSFLGRPWKLYSRTVVMQSQIDDLIQPEGWLAWEGTFALKTLFYAEFDNRGPGAATQNRVTWRGIKQITADHATKFAPGLFIGGNQWVKPTGIPYSGGLMTI 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10808621 10810387 + CmoCh06G015180.1 Cmo06g01518 385080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01518 528 CDD PMEI-like_3 46 177 - -
Cmo06g01518 528 Pfam Plant invertase/pectin methylesterase inhibitor 43 169 IPR006501 GO:0004857
Cmo06g01518 528 SUPERFAMILY Pectin lyase-like 212 524 IPR011050 -
Cmo06g01518 528 TIGRFAM PME_inhib: pectinesterase inhibitor domain 33 123 IPR006501 GO:0004857
Cmo06g01518 528 SMART PMEI_2 39 171 IPR006501 GO:0004857
Cmo06g01518 528 Gene3D Invertase/pectin methylesterase inhibitor family protein 39 176 IPR035513 -
Cmo06g01518 528 PANTHER PECTINESTERASE 15 123 - -
Cmo06g01518 528 PANTHER PECTINESTERASE 126 525 - -
Cmo06g01518 528 ProSitePatterns Pectinesterase signature 2. 359 368 IPR033131 -
Cmo06g01518 528 Pfam Pectinesterase 215 511 IPR000070 GO:0030599|GO:0042545
Cmo06g01518 528 Gene3D - 209 525 IPR012334 -
Cmo06g01518 528 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 43 171 IPR035513 -
Cmo06g01518 528 PANTHER PECTINESTERASE 15 123 - -
Cmo06g01518 528 PANTHER PECTINESTERASE 126 525 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01518 Cmo-Chr6:10808621 Cmo06g01530 Cmo-Chr6:10846792 0 dispersed
Cmo06g01517 Cmo-Chr6:10806270 Cmo06g01518 Cmo-Chr6:10808621 0 tandem
Cmo06g01518 Cmo-Chr6:10808621 Cmo06g01519 Cmo-Chr6:10816260 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01518 K01051 - csv:101212686 734.176