Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01523 ATGGTGGAGGAATCCAATGAATACCAAGAGGGAGAGCCATCTTGGGTGAGCGACAGGCGAGGGCTACTCGAGGCCACTGGAGCTAACATCAAGGCGAATGTGGTGGTGGCTAAAGACGGAAGTGGAAAGTACAAGACAATAACTGAAGCCCTTAAAGAGGTACCATTGAAGAGCAATACAACCTTTGTGATTTATGTGAAGGAAGGAGTTTATGAAGAGCAAGTGTTGGTGGACAAAAAAATGACCTATGTCATGGTGATTGGAGACGGCCCGACTAAGACCAAGATCACAGGTCGCAAGAGTGTCGAGGATGGAACACCCACATTCAAAAGTGCTACCTTTGCGGCTGTCGGATCCAACTTCATCGGAAAAGACTTGTGGTTCGAGAACTCGGCTGGACTTTACAAAGGCCAGGCCGTGGCACTCCGAGTTCAATCCGACATGTCAATCTTCTACAATTGTAGAATGGACGGCTATCAAGATACTTTCTACCCCCATGCCAAACGTCAATTCTACCGGGATTGCACAATCTCCGGTACCGTTGATTTCATCTTTGGCAATGCTGCTGTCGTGTTACAGAACTGTAAGATCTTAGTGAGGAAGCCAAAGCCAAAACAACCATGCCCTATCACTGCCCAAGGTCGAATGGAGAGTGATGAGCCCACTGGTATCGTCCTCCAAAATTGCACCATCTCTTCCGACCCTGACTACTACCCCGTTCGCCATACCAGTAAGTCCTACCTTGGTCGCCCATGGAAGCAGTATTCAAGAACCGTCATCATGCAATGCCAAATCGACGACTTGATCCAGCCTGAAGGTTGGCTTCCATGGAATGGTGATTTTGCTCTCAATACTTTGTATTACACAGAGTTTGATAACAGAGGACCTGGTGCAGCAAAAGAAAATAGAGTTAAGTGGAAGGGAGTTAAACAGATCACAGCAAAACAGGCCATCAATTTCACCCCTTCCTTGTTTATTCAAGTCTCTCAGTATGGTTATGGCCAATCAAACCCGACTTATCTTATCGAGGTTACTTCTGGAGCATCTTAG 1050 46.76 MVEESNEYQEGEPSWVSDRRGLLEATGANIKANVVVAKDGSGKYKTITEALKEVPLKSNTTFVIYVKEGVYEEQVLVDKKMTYVMVIGDGPTKTKITGRKSVEDGTPTFKSATFAAVGSNFIGKDLWFENSAGLYKGQAVALRVQSDMSIFYNCRMDGYQDTFYPHAKRQFYRDCTISGTVDFIFGNAAVVLQNCKILVRKPKPKQPCPITAQGRMESDEPTGIVLQNCTISSDPDYYPVRHTSKSYLGRPWKQYSRTVIMQCQIDDLIQPEGWLPWNGDFALNTLYYTEFDNRGPGAAKENRVKWKGVKQITAKQAINFTPSLFIQVSQYGYGQSNPTYLIEVTSGAS 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10823744 10825739 - CmoCh06G015230.1 Cmo06g01523 385085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01523 349 ProSitePatterns Pectinesterase signature 2. 177 186 IPR033131 -
Cmo06g01523 349 Pfam Pectinesterase 33 327 IPR000070 GO:0030599|GO:0042545
Cmo06g01523 349 PANTHER PECTINESTERASE 10 329 - -
Cmo06g01523 349 Gene3D - 27 335 IPR012334 -
Cmo06g01523 349 SUPERFAMILY Pectin lyase-like 30 327 IPR011050 -
Cmo06g01523 349 PANTHER PECTINESTERASE 10 329 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01523 Cmo-Chr6:10823744 Cmo06g01529 Cmo-Chr6:10841119 0 dispersed
Cmo06g01523 Cmo-Chr6:10823744 Cmo06g01527 Cmo-Chr6:10836266 6.57E-138 proximal
Cmo06g01523 Cmo-Chr6:10823744 Cmo08g00436 Cmo-Chr8:2704680 2.86E-98 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01523 K01051 - csv:101212686 504.212