Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo06g01527 | ATGTCAATCTTCTACAATTGTAGAATGGACGGCTATCAAGATACTTTCTACCCCCATGCCAAACGTCAATTCTACCGGGATTGCACAATCTCCGGTACCGTTGATTTCATCTTTGGCAATGCTGCTGTCGTGTTACAGAACTGTAAGATCTTAGTGAGGAAGCCAAAGCCGAAACAACCATGCCCTATCACTGCCCAAGGTCGAATGGAGAGTGATGAGCCCACTGGTATCGTCCTCCAAAATTGCACCATCTCTTCCGACCCTGACTACTACCCCGTTCGCCATACCAGTAAGTCCTACCTTGGTCGCCCATGGAAGCAGTATTCAAGAACCGTCATCATGCAATGCCAAATCGACGACTTGATCCAGCCTGAAGGTTGGCTTCCATGGAATGGTGATTTTGCTCTCAATACTTTGTATTACACAGAGTTTGATAACAGAGGACCTGGTGCAGCAAAAGAAAATAGAGTTAAGTGGAAGGGAGTTAAACAGATCACAGCAAAACAGGCCATCAATTTCACCCCTTCCTTGTTTATTCAAGGTGATGATTGGATCAAGAACACCGGAATACCGTACACTAGTGCCCTAATGAAAATCTAA | 600 | 45.17 | MSIFYNCRMDGYQDTFYPHAKRQFYRDCTISGTVDFIFGNAAVVLQNCKILVRKPKPKQPCPITAQGRMESDEPTGIVLQNCTISSDPDYYPVRHTSKSYLGRPWKQYSRTVIMQCQIDDLIQPEGWLPWNGDFALNTLYYTEFDNRGPGAAKENRVKWKGVKQITAKQAINFTPSLFIQGDDWIKNTGIPYTSALMKI | 199 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 10836266 | 10836865 | - | CmoCh06G015270.1 | Cmo06g01527 | 385089 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo06g01527 | 199 | Gene3D | - | 1 | 196 | IPR012334 | - | |
| Cmo06g01527 | 199 | Pfam | Pectinesterase | 1 | 182 | IPR000070 | GO:0030599|GO:0042545 | |
| Cmo06g01527 | 199 | PANTHER | PECTINESTERASE | 1 | 196 | - | - | |
| Cmo06g01527 | 199 | ProSitePatterns | Pectinesterase signature 2. | 30 | 39 | IPR033131 | - | |
| Cmo06g01527 | 199 | SUPERFAMILY | Pectin lyase-like | 2 | 193 | IPR011050 | - | |
| Cmo06g01527 | 199 | PANTHER | PECTINESTERASE | 1 | 196 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo06g01527 | Cmo-Chr6:10836266 | Cmo06g01530 | Cmo-Chr6:10846792 | 9.34E-143 | dispersed | |
| Cmo06g01523 | Cmo-Chr6:10823744 | Cmo06g01527 | Cmo-Chr6:10836266 | 6.57E-138 | proximal | |
| Cmo06g01527 | Cmo-Chr6:10836266 | Cmo06g01529 | Cmo-Chr6:10841119 | 1.16E-151 | proximal | |
| Cmo06g01527 | Cmo-Chr6:10836266 | Cmo08g00437 | Cmo-Chr8:2725138 | 5.22E-118 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo06g01527 | K01051 | - | cmax:111472266 | 351.288 |