Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01532 ATGGCGTATGACGGCGGTGGATGCAAGAACAATAAGGCTGCCCTGGTTGGGTTGTTGTCTCTGTTTTTTGTTGCCTTGGTTAACGGTGTAAGTGGCGCAGGAGAGGAACCTGGCTCCTCTAATGCTGCCATTAAGACTCTATGTGAGCCCACTACTTATCGTGAAACTTGCGAAGAAGTCCTGGTGAAGTCCAATGTTGACTCAAAAGACCCACGTGAGTTGGTCAAGGCAGGGTTCCATTTTGCTATTGAGCAGCTCAAAGCGGCCATTGCAAATTCCCCCACTTTGAAACAAGCCGCCACTGACCCCATGGCGCAAAAAGCAGTTGATGCTTGCGACGAGCTCATGGATTATGCAATTGATGATCTTTTAACTTCCTTTGATAAAATCACCGATAGTTTTGATGTACACAGAGTGAATGCTTATCTTGAGAACCTTAGGATTTGGTTGAGCGCTGCATTGACATATCAAGAAACTTGTTTGGATGGTTTCGAGAATGTTCCTGGCGATACTGGTGAAAAGATGAAGAATTTGTTGAAGACGTCAAGAGAAATGACCGCCAATGGACTTGTGATGGTGGGTGAGGTTACATCCCTTGTGAGCACTTTGTGGGAGAAGTTGGGACTGCTGCCACAATCGGGGCGACAACTTCGAACGGAGGAATCCAATGAATACCAAGCGGGAGAGCCATCTTGGGTGAGCGACAGGCGAGGGCTACTCGAGGCCACTGGAGCTAACATCAAGGCGAATGTGGTGGTGGCTAAAGACGGAAGTGGAAAGTACAAGACAATAACTGAAGCCCTTAAAGAGGTACCATTGAAGAGCAATACAACCTTTGTGATTTATGTGAAGGAAGGAGTTTATGAAGAGCAAGTGTTGGTGGACAAAAAAATGACCTATGTCATGGTGATTGGAGACGGCCCGACTAAGACCAAAATCACAGCTAGCAAGAATGTCATTGACGGAACACCCACATTCAAAAGTGCTACCTTTGCGGCGATCGGATCCAACTTCATTGGAAAAGACTTGTGGTTCGATAACTCAGCTGGGCCTAAGAAACACCAGGCTGTGGCACTCCGAGTTCAATCCGACATGTCAATCTTCTACAATTGTAGAATGGACGCCTATCAAGATACTCTCTACCCCCAAACCAAACGTCAATTCTACCGAGATTGCACAATCTCCGGTACCGTTGATTTCATCTTTGGCAATGCTGCTGTCGTGTTACAAAACTGTAAGATCTTAGTGAGGAAGCCAATGCCGAATCAAACTTGCTTTGTCACTGCCCAAGGTCGAGTGGAGATTGATGAGCCCACTGGTATCGTCCTCCAAAATTGCATTATCTCTGCCGACCCTGAGTTCTACCCCATTCGCCATACCAGTAAGATCTTCCTTGGTCGCCCATGGAAAAAGTATTCAAGAACCGTGATCATGCAATGCCAACTCGACGACTTGATCCATCCTGAAGGATGGATGCGATGGAGTGATGATTCTACTCTCAAGACTTTGTTTTACACAGAGTTTGATAATAGAGGACCTGGTGCAGCAAAAGAAAATAGAGTCAAGTGGGAGGGAATTAAACAAATCACAGCAAAACAGGCTATCAATTTCACCCCTTCTTTGTTTATTCAAGGTGATGATTGGATCAAGCATAGTGGAATACCGTACACAGGTGGCATGATGAAAATCTAA 1692 45.74 MAYDGGGCKNNKAALVGLLSLFFVALVNGVSGAGEEPGSSNAAIKTLCEPTTYRETCEEVLVKSNVDSKDPRELVKAGFHFAIEQLKAAIANSPTLKQAATDPMAQKAVDACDELMDYAIDDLLTSFDKITDSFDVHRVNAYLENLRIWLSAALTYQETCLDGFENVPGDTGEKMKNLLKTSREMTANGLVMVGEVTSLVSTLWEKLGLLPQSGRQLRTEESNEYQAGEPSWVSDRRGLLEATGANIKANVVVAKDGSGKYKTITEALKEVPLKSNTTFVIYVKEGVYEEQVLVDKKMTYVMVIGDGPTKTKITASKNVIDGTPTFKSATFAAIGSNFIGKDLWFDNSAGPKKHQAVALRVQSDMSIFYNCRMDAYQDTLYPQTKRQFYRDCTISGTVDFIFGNAAVVLQNCKILVRKPMPNQTCFVTAQGRVEIDEPTGIVLQNCIISADPEFYPIRHTSKIFLGRPWKKYSRTVIMQCQLDDLIHPEGWMRWSDDSTLKTLFYTEFDNRGPGAAKENRVKWEGIKQITAKQAINFTPSLFIQGDDWIKHSGIPYTGGMMKI 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10852440 10854209 - CmoCh06G015320.1 Cmo06g01532 385094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01532 563 SMART PMEI_2 39 192 IPR006501 GO:0004857
Cmo06g01532 563 CDD PMEI-like_3 46 198 - -
Cmo06g01532 563 Pfam Pectinesterase 250 546 IPR000070 GO:0030599|GO:0042545
Cmo06g01532 563 PANTHER PECTINESTERASE 32 560 - -
Cmo06g01532 563 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 43 195 IPR035513 -
Cmo06g01532 563 PANTHER PECTINESTERASE 32 560 - -
Cmo06g01532 563 TIGRFAM PME_inhib: pectinesterase inhibitor domain 21 192 IPR006501 GO:0004857
Cmo06g01532 563 Pfam Plant invertase/pectin methylesterase inhibitor 43 188 IPR006501 GO:0004857
Cmo06g01532 563 ProSitePatterns Pectinesterase signature 2. 394 403 IPR033131 -
Cmo06g01532 563 Gene3D Invertase/pectin methylesterase inhibitor family protein 39 196 IPR035513 -
Cmo06g01532 563 SUPERFAMILY Pectin lyase-like 247 559 IPR011050 -
Cmo06g01532 563 Gene3D - 244 560 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01519 Cmo-Chr6:10816260 Cmo06g01532 Cmo-Chr6:10852440 0 dispersed
Cmo06g01529 Cmo-Chr6:10841119 Cmo06g01532 Cmo-Chr6:10852440 0 dispersed
Cmo06g01530 Cmo-Chr6:10846792 Cmo06g01532 Cmo-Chr6:10852440 0 dispersed
Cmo06g01532 Cmo-Chr6:10852440 Cmo06g01534 Cmo-Chr6:10858549 0 dispersed
Cmo06g01532 Cmo-Chr6:10852440 Cmo06g01533 Cmo-Chr6:10855039 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01532 K01051 - csv:101212686 760.755