Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01534 ATGGCGTATGACGGCGGTGGTTGCAAGAACAATAAAGCTGCCCTGGTTGGGTTGTTGTCTCTGTTTTTGGTTGCCTTGGTTAATGGTGTAAGTGGAGCAGGAGAGGACTCTGGGTCCTCCAATGTTGCCATTAAGACTCTATGTGAGCCCACTAAGTACCGTGAAACTTGTGAAGAAGCCCTGGTGAAATCCAATGTTGACTCAAAAGACCCACGTGAGTTGATCAAGGCAGGGTTCCATTTTGCTATTGAGCAGCTCAAAGCGGCAATTGCAAATTCCCCCACTTTGAAACAAGCCACCACTGACCCCATGGCGAAGGAAGCCATTGATACTTGTGACGAGCTCATGGATTATGCAATTGATGATCTTTTAACTACGTTTGATCAAATCACTGATAGTTTTAGTTTAAATAGGGTGGATAATTATCTTAAGAATCTTAGGATTTGGTTGAGTGGTGCGTTGACATATCAAGAAACTTGTTTGGATGCTTTCGAGAATGTTACTGGCGATACTGGTGAGAAGATGGCAAATTTGTTGAAGACGTCAAAAGAAATGACTGCTAATGGACTTGTGATGGTGGGTGAGGTTACATCTCTTGTGAGCTCTTTGTGGAAGGCGCTTGGGCTGCCAGAAACAGGGCGACAACTCCGAGGAGAAGAACCCGATGAAGAAGATGAAGGGGAAGAGCCATCTTGGGTCAATGACAGGCGAGGGCTACTCCAACACACTGGTGCCAAGATCAGGGCGAATGTGGTGGTGGCTAAAGACGGAAGTGGAAAGTACAAGACAATAACTCAAGCCCTTCAAGATGTCCCAAGGAAGAGCAATAAAACCTTTGTGATTTATGTGAAGGAAGGAGTTTACCAAGAGCAAGTAATGGTGGACAAAACAATGACCTGGGTCATGATGATTGGAGATGGCCCTACCAAGACCAAGATCACTGGTAGAAAGAACTTCAAGGACGGAACAAACACATTCCAAACCGCTACATTTGCGGCGGTCGGAACCAACTTCATCGGAAAAGACTTGTGGTTCGAGAATTCAGCTGGGCCTGAGAAACACCAGGCTGTGGCACTCCGAGTTCAATCAGACATGTCAATCTTCTACAATTGTAGAATGGACGGCTATCAAGATACTCTCTACACCCATGCTCATCGTCAATTCTTTCGAGATTGCACCATCACTGGTACCATTGATTTCATCTTTGGCAATGCTGCTGTTGTCTTACAGAACTGTAAGATCTTCGTGAGGAAGCCAATGGAGAATCAAAAATGCATCGTCACTGCCCAAGGTCGGACCGATAGGAAAGAGCCCACTGGTATCGTCCTCCAAAACTGCGCCATCTCTTCTGACCCTGGCTTCTTCCCCGTTCGCCATGTCTTCAAGACCTACCTTGGCCGCCCATGGAAGCAGTATTCAAGAACCATCATCATGCAATGCCAAATCGACGACTTGATCCAGCCTGAAGGGTGGCTTCCATGGGAGGGCGATTTTGCTCTCAGGACTTTGTTTTACACAGAGTATGATAACAGAGGACCTGGTGCAGCAAAACAAAATCGAGTTAAGTGGAGGGGAATTAAACAAATCACACCGAAGCATGCCATTGATTTCACCCCTGGGTTGTTTATTCGTGGTAATCCTTGGATTAGGCGCACTGGAGTTCCGTACTATTCGGGCATGGCAACGATCTAA 1692 46.39 MAYDGGGCKNNKAALVGLLSLFLVALVNGVSGAGEDSGSSNVAIKTLCEPTKYRETCEEALVKSNVDSKDPRELIKAGFHFAIEQLKAAIANSPTLKQATTDPMAKEAIDTCDELMDYAIDDLLTTFDQITDSFSLNRVDNYLKNLRIWLSGALTYQETCLDAFENVTGDTGEKMANLLKTSKEMTANGLVMVGEVTSLVSSLWKALGLPETGRQLRGEEPDEEDEGEEPSWVNDRRGLLQHTGAKIRANVVVAKDGSGKYKTITQALQDVPRKSNKTFVIYVKEGVYQEQVMVDKTMTWVMMIGDGPTKTKITGRKNFKDGTNTFQTATFAAVGTNFIGKDLWFENSAGPEKHQAVALRVQSDMSIFYNCRMDGYQDTLYTHAHRQFFRDCTITGTIDFIFGNAAVVLQNCKIFVRKPMENQKCIVTAQGRTDRKEPTGIVLQNCAISSDPGFFPVRHVFKTYLGRPWKQYSRTIIMQCQIDDLIQPEGWLPWEGDFALRTLFYTEYDNRGPGAAKQNRVKWRGIKQITPKHAIDFTPGLFIRGNPWIRRTGVPYYSGMATI 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10858549 10860317 - CmoCh06G015340.1 Cmo06g01534 385096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01534 563 Pfam Pectinesterase 250 546 IPR000070 GO:0030599|GO:0042545
Cmo06g01534 563 PANTHER PECTINESTERASE 24 561 - -
Cmo06g01534 563 CDD PMEI-like_3 46 198 - -
Cmo06g01534 563 SUPERFAMILY Pectin lyase-like 247 559 IPR011050 -
Cmo06g01534 563 TIGRFAM PME_inhib: pectinesterase inhibitor domain 19 193 IPR006501 GO:0004857
Cmo06g01534 563 PANTHER PECTINESTERASE 24 561 - -
Cmo06g01534 563 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 43 195 IPR035513 -
Cmo06g01534 563 Gene3D Invertase/pectin methylesterase inhibitor family protein 39 196 IPR035513 -
Cmo06g01534 563 Pfam Plant invertase/pectin methylesterase inhibitor 43 190 IPR006501 GO:0004857
Cmo06g01534 563 ProSitePatterns Pectinesterase signature 2. 394 403 IPR033131 -
Cmo06g01534 563 ProSitePatterns Pectinesterase signature 1. 275 294 IPR018040 -
Cmo06g01534 563 Gene3D - 244 560 IPR012334 -
Cmo06g01534 563 MobiDBLite consensus disorder prediction 213 232 - -
Cmo06g01534 563 SMART PMEI_2 39 192 IPR006501 GO:0004857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01516 Cmo-Chr6:10803307 Cmo06g01534 Cmo-Chr6:10858549 0 dispersed
Cmo06g01517 Cmo-Chr6:10806270 Cmo06g01534 Cmo-Chr6:10858549 0 dispersed
Cmo06g01532 Cmo-Chr6:10852440 Cmo06g01534 Cmo-Chr6:10858549 0 dispersed
Cmo06g01534 Cmo-Chr6:10858549 Cmo08g00436 Cmo-Chr8:2704680 0 dispersed
Cmo08g00437 Cmo-Chr8:2725138 Cmo06g01534 Cmo-Chr6:10858549 0 dispersed
Cmo06g01533 Cmo-Chr6:10855039 Cmo06g01534 Cmo-Chr6:10858549 2.05E-155 tandem
Cmo17g00328 Cmo-Chr17:1985349 Cmo06g01534 Cmo-Chr6:10858549 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01534 K01051 - csv:101212686 795.038