Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01548 ATGTCTACGGCGAGTTCGAGCTCTGTAAGGAAACCTAGTGAATCTGTTCCTCTACAGTTTCCGGCCGGCCTTCGTGTTCTTGTTGTTGATGATGATCCTACCTGCCTTATGATCTTGGAGAAGATGCTTCGGATTTGTCGCTACGAAGTAACGAAATGTAGTCGAGCTGAGGATGCGTTATCGGTCCTCAGACGTTACAAGAACGGGTTCGATATCGTTTTGAGCGATGTTCATATGCCAGACATGGATGGATTCAAGCTTCTGGAATGCATTGGACTTGAAATGGACTTGCCTGTGATTATGATGTCGGTGGATGACGGGAAAAACGTTGTTATGAAGGGAGTGACTCATGGTGCTTGTGACTACTTAATAAAACCTGTTCGAATTGAAGCGTTGAAGAACATATGGCAGCACGTTGTTCGTAAGCGGAAGAATGAATGGAAGGACTTGGAGCAATCTGGTGTTGAGGATGTCGATCGACAGCAAAAGGCGAATGAAGAAGCAGATTATTCATCTTCTGCTAATGAAGGAAGTTGGAGGAACTCGAAGAGGAGGAAGGAGGACATAGACGATGCTGAGGAGAGGGATGACTCATCGACCCTAAAGAAACCGAGGGTTGTTTGGTCCGTTGAGCTTCATCAACAGTTCGTGGGTGCTGTTAATCAACTAGGAATCGAGAAGGCTGTTCCCAAGAAGATTCTCGAATTGATGAATGTTCCTGGACTCACTAGAGAAAACGTTGCCAGCCATCTTCAGAAATATCGCCTGTACCTGAGAAGAGTAAGTGGAATGACACTGCAACAGAGTAATCTGAACAACACGTTCATGAGTGCCCAAGAAGCATTTGGCTCGACGTTGAACGGGCTTGATCTTCAAACGCTCGCTGCTGCTGGTCAACTCCAGCCACAGAGCCTTGCTACGCTCCAAGCAGCGGGATTTGGTCGGTCTACAGCGAAATCAGGCATGCCTATGCCTCTTGTTGACCAAAGGAACCACTTTTTTAGCTTCGAAAATCCGAAGTTGAGATTCAGTGATGGACAACAGGCACATTTGAACGGTAGTAAACCGATGAATCTTCTTCATGGAATTCCGACAACGATGGAGCCGAAACAGCTAGCTAATCTGCAGCAGCACTCTGCACAATCTCATGGAAACATGACAATGCAAGCTAGTGCCCAAGGAGGCCAAACTAGCTCTCAACTGATGCAGACACCTCAACCACAAGCTCGACCACAGATCCTAAATGAATGTACAGCAACGAGCGTTACAAGGCTTCCACCAACAATACAGCAGTCGATATTGCCGAATGGAACTGCTGGTTCGGTTTTGGCTAGGAATGAATTTACGACTAACAGCAGAGGTGGAGGCTACAATCTAATTTCACCAGCCTCAACAATGTCAAATTTTCCCATGAACCAAACTGCAGAATTGCCTGGTAACAGTTTTCCACTTCAAAGTACACCAGGGATGTCGAGTATTGTCCCAAAGGGAAGATTCCCGGACGAGGTTAACTCAGTCTCGGATATTAAAGGATCTGACGGTTTCGTTCCGAGCTATGATATGTTTAGGGATCTGCACCCTCAGAAGTCAGATTGGGACTTGCAACACGTAGGCGTGACCTTCGATGCATCGCAAGGTAGTCTTGACATTCCGACCGCAGCATTTGGTCATCAAGGGTATGCCTCTAGCCAACAAAATGGACATAACAGGCACACATCTACAGTAGGCAAGGCCATGTTCTTGTTGGAAGAAGGAAGTGACAATGGGAATGCCCAAAGTATGGGTCAACAACTCAATCCTCTTTTCGATGATGGTTCGGTGAGAGTTAAAATGGAACGAGCTTCGGAAACCAGCAGTCAAACCGACCTTTTTTCTGAACACTTTGGTCAGGAGGAGGACCTAATGAGTGCACTTCTTAAACAGCAGCAGGGAAGCATTGCAACAGCTGAAAGTGAGTTGGAATGGTTTCATCATAATACTCCTGTTTAA 1989 46.3 MSTASSSSVRKPSESVPLQFPAGLRVLVVDDDPTCLMILEKMLRICRYEVTKCSRAEDALSVLRRYKNGFDIVLSDVHMPDMDGFKLLECIGLEMDLPVIMMSVDDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSGVEDVDRQQKANEEADYSSSANEGSWRNSKRRKEDIDDAEERDDSSTLKKPRVVWSVELHQQFVGAVNQLGIEKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRVSGMTLQQSNLNNTFMSAQEAFGSTLNGLDLQTLAAAGQLQPQSLATLQAAGFGRSTAKSGMPMPLVDQRNHFFSFENPKLRFSDGQQAHLNGSKPMNLLHGIPTTMEPKQLANLQQHSAQSHGNMTMQASAQGGQTSSQLMQTPQPQARPQILNECTATSVTRLPPTIQQSILPNGTAGSVLARNEFTTNSRGGGYNLISPASTMSNFPMNQTAELPGNSFPLQSTPGMSSIVPKGRFPDEVNSVSDIKGSDGFVPSYDMFRDLHPQKSDWDLQHVGVTFDASQGSLDIPTAAFGHQGYASSQQNGHNRHTSTVGKAMFLLEEGSDNGNAQSMGQQLNPLFDDGSVRVKMERASETSSQTDLFSEHFGQEEDLMSALLKQQQGSIATAESELEWFHHNTPV 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10900168 10903800 + CmoCh06G015480.1 Cmo06g01548 385110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01548 662 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 202 259 IPR017930 -
Cmo06g01548 662 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Cmo06g01548 662 SUPERFAMILY Homeodomain-like 200 260 IPR009057 -
Cmo06g01548 662 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 632 - -
Cmo06g01548 662 Gene3D - 24 161 - -
Cmo06g01548 662 PIRSF RR_ARR_type-B 4 653 IPR017053 GO:0003677|GO:0003700|GO:0009736
Cmo06g01548 662 MobiDBLite consensus disorder prediction 179 200 - -
Cmo06g01548 662 Pfam Myb-like DNA-binding domain 205 255 IPR001005 -
Cmo06g01548 662 SMART REC_2 24 136 IPR001789 GO:0000160
Cmo06g01548 662 Gene3D - 200 262 - -
Cmo06g01548 662 SUPERFAMILY CheY-like 23 148 IPR011006 -
Cmo06g01548 662 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 632 IPR045279 GO:0009736
Cmo06g01548 662 MobiDBLite consensus disorder prediction 151 200 - -
Cmo06g01548 662 CDD REC_typeB_ARR-like 26 140 - -
Cmo06g01548 662 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 203 256 IPR006447 GO:0003677
Cmo06g01548 662 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Cmo06g01548 662 MobiDBLite consensus disorder prediction 151 166 - -
Cmo06g01548 662 MobiDBLite consensus disorder prediction 375 403 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01548 Cmo-Chr6:10900168 Cmo09g00426 Cmo-Chr9:1898549 9.98E-105 dispersed
Cmo14g01636 Cmo-Chr14:12981700 Cmo06g01548 Cmo-Chr6:10900168 0 wgd
Cmo17g00339 Cmo-Chr17:2056494 Cmo06g01548 Cmo-Chr6:10900168 0 wgd
Cmo06g01548 Cmo-Chr6:10900168 Cmo08g01225 Cmo-Chr8:7770459 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10034 PF00072 Response_reg 1.10E-21 CL0304 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01548 - K14491 csv:101209013 1150.96