Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo06g01548 | ATGTCTACGGCGAGTTCGAGCTCTGTAAGGAAACCTAGTGAATCTGTTCCTCTACAGTTTCCGGCCGGCCTTCGTGTTCTTGTTGTTGATGATGATCCTACCTGCCTTATGATCTTGGAGAAGATGCTTCGGATTTGTCGCTACGAAGTAACGAAATGTAGTCGAGCTGAGGATGCGTTATCGGTCCTCAGACGTTACAAGAACGGGTTCGATATCGTTTTGAGCGATGTTCATATGCCAGACATGGATGGATTCAAGCTTCTGGAATGCATTGGACTTGAAATGGACTTGCCTGTGATTATGATGTCGGTGGATGACGGGAAAAACGTTGTTATGAAGGGAGTGACTCATGGTGCTTGTGACTACTTAATAAAACCTGTTCGAATTGAAGCGTTGAAGAACATATGGCAGCACGTTGTTCGTAAGCGGAAGAATGAATGGAAGGACTTGGAGCAATCTGGTGTTGAGGATGTCGATCGACAGCAAAAGGCGAATGAAGAAGCAGATTATTCATCTTCTGCTAATGAAGGAAGTTGGAGGAACTCGAAGAGGAGGAAGGAGGACATAGACGATGCTGAGGAGAGGGATGACTCATCGACCCTAAAGAAACCGAGGGTTGTTTGGTCCGTTGAGCTTCATCAACAGTTCGTGGGTGCTGTTAATCAACTAGGAATCGAGAAGGCTGTTCCCAAGAAGATTCTCGAATTGATGAATGTTCCTGGACTCACTAGAGAAAACGTTGCCAGCCATCTTCAGAAATATCGCCTGTACCTGAGAAGAGTAAGTGGAATGACACTGCAACAGAGTAATCTGAACAACACGTTCATGAGTGCCCAAGAAGCATTTGGCTCGACGTTGAACGGGCTTGATCTTCAAACGCTCGCTGCTGCTGGTCAACTCCAGCCACAGAGCCTTGCTACGCTCCAAGCAGCGGGATTTGGTCGGTCTACAGCGAAATCAGGCATGCCTATGCCTCTTGTTGACCAAAGGAACCACTTTTTTAGCTTCGAAAATCCGAAGTTGAGATTCAGTGATGGACAACAGGCACATTTGAACGGTAGTAAACCGATGAATCTTCTTCATGGAATTCCGACAACGATGGAGCCGAAACAGCTAGCTAATCTGCAGCAGCACTCTGCACAATCTCATGGAAACATGACAATGCAAGCTAGTGCCCAAGGAGGCCAAACTAGCTCTCAACTGATGCAGACACCTCAACCACAAGCTCGACCACAGATCCTAAATGAATGTACAGCAACGAGCGTTACAAGGCTTCCACCAACAATACAGCAGTCGATATTGCCGAATGGAACTGCTGGTTCGGTTTTGGCTAGGAATGAATTTACGACTAACAGCAGAGGTGGAGGCTACAATCTAATTTCACCAGCCTCAACAATGTCAAATTTTCCCATGAACCAAACTGCAGAATTGCCTGGTAACAGTTTTCCACTTCAAAGTACACCAGGGATGTCGAGTATTGTCCCAAAGGGAAGATTCCCGGACGAGGTTAACTCAGTCTCGGATATTAAAGGATCTGACGGTTTCGTTCCGAGCTATGATATGTTTAGGGATCTGCACCCTCAGAAGTCAGATTGGGACTTGCAACACGTAGGCGTGACCTTCGATGCATCGCAAGGTAGTCTTGACATTCCGACCGCAGCATTTGGTCATCAAGGGTATGCCTCTAGCCAACAAAATGGACATAACAGGCACACATCTACAGTAGGCAAGGCCATGTTCTTGTTGGAAGAAGGAAGTGACAATGGGAATGCCCAAAGTATGGGTCAACAACTCAATCCTCTTTTCGATGATGGTTCGGTGAGAGTTAAAATGGAACGAGCTTCGGAAACCAGCAGTCAAACCGACCTTTTTTCTGAACACTTTGGTCAGGAGGAGGACCTAATGAGTGCACTTCTTAAACAGCAGCAGGGAAGCATTGCAACAGCTGAAAGTGAGTTGGAATGGTTTCATCATAATACTCCTGTTTAA | 1989 | 46.3 | MSTASSSSVRKPSESVPLQFPAGLRVLVVDDDPTCLMILEKMLRICRYEVTKCSRAEDALSVLRRYKNGFDIVLSDVHMPDMDGFKLLECIGLEMDLPVIMMSVDDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSGVEDVDRQQKANEEADYSSSANEGSWRNSKRRKEDIDDAEERDDSSTLKKPRVVWSVELHQQFVGAVNQLGIEKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRVSGMTLQQSNLNNTFMSAQEAFGSTLNGLDLQTLAAAGQLQPQSLATLQAAGFGRSTAKSGMPMPLVDQRNHFFSFENPKLRFSDGQQAHLNGSKPMNLLHGIPTTMEPKQLANLQQHSAQSHGNMTMQASAQGGQTSSQLMQTPQPQARPQILNECTATSVTRLPPTIQQSILPNGTAGSVLARNEFTTNSRGGGYNLISPASTMSNFPMNQTAELPGNSFPLQSTPGMSSIVPKGRFPDEVNSVSDIKGSDGFVPSYDMFRDLHPQKSDWDLQHVGVTFDASQGSLDIPTAAFGHQGYASSQQNGHNRHTSTVGKAMFLLEEGSDNGNAQSMGQQLNPLFDDGSVRVKMERASETSSQTDLFSEHFGQEEDLMSALLKQQQGSIATAESELEWFHHNTPV | 662 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 10900168 | 10903800 | + | CmoCh06G015480.1 | Cmo06g01548 | 385110 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo06g01548 | 662 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 202 | 259 | IPR017930 | - | |
Cmo06g01548 | 662 | Pfam | Response regulator receiver domain | 26 | 134 | IPR001789 | GO:0000160 | |
Cmo06g01548 | 662 | SUPERFAMILY | Homeodomain-like | 200 | 260 | IPR009057 | - | |
Cmo06g01548 | 662 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 1 | 632 | - | - | |
Cmo06g01548 | 662 | Gene3D | - | 24 | 161 | - | - | |
Cmo06g01548 | 662 | PIRSF | RR_ARR_type-B | 4 | 653 | IPR017053 | GO:0003677|GO:0003700|GO:0009736 | |
Cmo06g01548 | 662 | MobiDBLite | consensus disorder prediction | 179 | 200 | - | - | |
Cmo06g01548 | 662 | Pfam | Myb-like DNA-binding domain | 205 | 255 | IPR001005 | - | |
Cmo06g01548 | 662 | SMART | REC_2 | 24 | 136 | IPR001789 | GO:0000160 | |
Cmo06g01548 | 662 | Gene3D | - | 200 | 262 | - | - | |
Cmo06g01548 | 662 | SUPERFAMILY | CheY-like | 23 | 148 | IPR011006 | - | |
Cmo06g01548 | 662 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 1 | 632 | IPR045279 | GO:0009736 | |
Cmo06g01548 | 662 | MobiDBLite | consensus disorder prediction | 151 | 200 | - | - | |
Cmo06g01548 | 662 | CDD | REC_typeB_ARR-like | 26 | 140 | - | - | |
Cmo06g01548 | 662 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 203 | 256 | IPR006447 | GO:0003677 | |
Cmo06g01548 | 662 | ProSiteProfiles | Response regulatory domain profile. | 25 | 140 | IPR001789 | GO:0000160 | |
Cmo06g01548 | 662 | MobiDBLite | consensus disorder prediction | 151 | 166 | - | - | |
Cmo06g01548 | 662 | MobiDBLite | consensus disorder prediction | 375 | 403 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo06g01548 | Cmo-Chr6:10900168 | Cmo09g00426 | Cmo-Chr9:1898549 | 9.98E-105 | dispersed | |
Cmo14g01636 | Cmo-Chr14:12981700 | Cmo06g01548 | Cmo-Chr6:10900168 | 0 | wgd | |
Cmo17g00339 | Cmo-Chr17:2056494 | Cmo06g01548 | Cmo-Chr6:10900168 | 0 | wgd | |
Cmo06g01548 | Cmo-Chr6:10900168 | Cmo08g01225 | Cmo-Chr8:7770459 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10034 | PF00072 | Response_reg | 1.10E-21 | CL0304 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo06g01548 | - | K14491 | csv:101209013 | 1150.96 |