Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01555 ATGGGCGGGCTGGATAGGTCACAGACCAGCTCCAATTCCATGCAGCGTGTTAAGGTTTACCGGTTGAATGATGATGGCAAGTGGGATGACCAAGGAACAGGCCATGTCACTGTGGACTATATGGAGAGATCAGAGGAGTTGGGGCTGTTTGTCATTGATGAAGAAGACAACGAGACTTTACTTCTACATCGTATCAGCTCAGATGATATCTATCGGAAGCAAGAAGATACTATTATTTCATGGAGAGATCCAGAATATTCAACAGAGCTAGCACTTAGTTTTCAAGAGGCTACAGGATGCTCTTTCATTTGGGATAATATCAGTAGCGTTCAAAGGAATCTCCAGTTTAGTACTCTTAGCAATGAGACATTTCATAGTGTGACTAGTGAGCTAAGGGAGCTTCCTACTGTCGAGCTATCTACACTTCCGCTAATACTTAAGACTGTGGTTGAGAGTGGAATTGCAGATCAAATGAGTTCATGTCATTTTGAAGAGCAGCATGTTGGCGGTAAGAAAGCTGCCTGGTCTAGAAAGCTGATGAACCTTTTCCGAATCTGTGAGGATTTGGAAAATTCCGATGGTCTTTACATGATATTTAAAATAGTTAGAGGAATTGTTTTACTCAACAGTCCGCAAATCTTCGAGAAAATATTCCACGACGATCTTATTATGGATATTATCGGTTCTCTTGAGTTTGATATGGATTTAGTTATTGGTCTACTGCTATTCATATACACCTTGGAACATTTGGTTCTCTACTTTGGGACTCCTTGCCTGAAAAATATTGCTGTAATTGCTATGAATAGCTATTTGCAGACTGTCCTGTGCTGTTTTTGTTATCTTGCTCTTGACGATCCCGAGGTTCCACATACTCAGCAATTTCGTAATTTCTTGAAAGAGCATGTTGTATTTAAGGAGGCTATTCGCATTAAGAGCCCCGCAATTCTGTCAAAAATACACCAGACATATAGAGTTGGTTATTTAAAGGATGTTGTTTTGGCACGAATGTTGGATGACTCCGTGGTTGCTAATCTGAATTCCATAATTCATGCCAACAATGTGCTTGTTGTTACTTCTTTGAAGGACGACAGTACCTTTATTCAGGAATTGTTTGCTAGGTTGAGATCACCCTCCACACCTGACGACTCAAAAAAGGACTTGGTTTATTTTCTGCACGAGTTTTGTAGCGTAAGCAAAAGCCTCCAAATGGCAATGCAGCTTCGGTTGTTCAGGGACCTTATGAATGAAGGTATCTTTGACATCATTACGGATGTCTTACAGAGTCCAGACAAAAAGCTTGTCTTAACAGGGACAGATATCCTCATTCTTTTCTTGAATCAGGATCCAAATCTTTTGCGTACTCATGTTGCTCGACAGGAAGGATTTCCACTGTTTGGACTTCTGATTAAAGGTATGGTAACAGATTTTGGGGACAACATGCACTGCCAGTTTCTTGAAATTCTTCGCAATCTATTGGATACCTATGCATTACCTGGAGTCCAGAGAGATACAATTGTTGAGATTTTCTATGAGAAGCATTTGGGCCAATTAATAGACATCATAACAGCATCATGTCCTACAGAAGGTTTGCAATCAGGCAAGAACATTGAAGACGCCGATGGAAGACTGGGAGATACGAATGGCGTGAAGCCTGAGATTCTGTCGAATATATGCGAATTACTTTGCTTTTGTGTGCTTCAACACCCTTATAGAATAAAGTCTAATTTTCTCCAAAATAATATCATAGATAAAGTGGTGTTGTTAACACAACGGAAGGAAAAGTACTTGGTTGTTGCTGCAGTTCGATTTATTCGTACTGTTCTTTCGCGCCATGATGAACATCTGATAAGTTATTTCGTCAAGAATAACACTCTCAAACCTATCATAGATGTATTTGTTGCTAATGGAAGTCGGTATAATCTGCTAAATTCTGCTGTTTTAGAACTTCTCGAGTATATAAAGAAGTTGTCCCGATTTGAAAATTTGTCTTCCATTCAAGCTTTAAAAGTTAAATATGATCAGTGCCTTGAAAATTGTGAAATGAAAGGCACTTTGAACACATCAGATCCTCGAAAAAGAAATGACGAGCGTGCTCCTGAGAAAGAAGAGGATGACTATTTCAATGGGGACAGTGATGAAGATGATACTGCATCTGCATCTGTTGCTCGAAAACAGAACGAACAATCTCAACCTGGTTTATCCAATGGTGTTACTACAAATTGCCCACCAGTAAGGTCAGGTGGTCTAGTTGATTACGAGGACGATGAAGACGATGAAGACTACAGACCACCCCAGAGAAAACAACCCGACACTTCAGACAAAGACATTGAAATAATGGAAGTCCTCTGGCATAAGCGGAAGTTGGCTCCTCAAGAGGAACCTGAGATAGTTAAGAAGCAACGACTGGTTAGGAAGCACAAGCCAAAAGATGGTGTACTTGCTTCCTTGTGTACCACACTGAGTCAGGCCGTCTTACCTGGTAAGAAGACAACAAACGCTACCGAAACTAGTTCGTGCATGCCTTATGAGAACAAAAGCTCAGTCGAAGAAAGTCATGAGACAAATCATGCTATTCCTAGCAGCTCTTCTGATGGCAGTAGCAGCAATTCTGATGAGGAAAATCGCAGGGAAAACAAATCTACAGCTTCTAAAGGTTACTCCAACAGTAGTGTCTTGCATGTTACTTCGGAAAACCAACAATTGGGCGGGGACGACTATCCATTGATACCAACAAAATCATCGCCCGAAATGACTGTGAACGGATCGATAATCGAAGATGAGGACGTCTTACTGTATAGTGCGACCGAGCGGTACTCGCTCAAGTTTACCTCTAGCATGTTTACTCTGGTTTCTTGTTTTTCTATCTTCTACAAGATGAGTACCATGAAGTTTTGCCGGGAATGTAACAACATTCTCTATCCGAAGGAGGATAGGGATGAGAAGATTCTTCTCTATGCGTGTCGCAACTGTGATCACCAGGAAGTTGCTGACAATAACTGTGTCTATAGGAATGAGATTCATCACGCCGTAGGGGAACGCACTCAAGTTCTGCAAGATGTTGCTGCGGATCCAACGCTCCCTCGCACAAAAGCTGTCCGATGTGCTCAATGCAACCATGGAGAAGCTGTTTTCTTCCAGGCTACTGCCAGAGGGGAGGAAGGTATGACATTATTCTTCGTTTGCTGCAATCCAAATTGTGGTCACAGGCATCAACCACCGGAGCAATTGGGAGTGCTGAATACTGATTTTTCATTTGTTATTGCTGTGGATGTGAAAGATAAAGAGTATTGTATACACAAATGA 3303 41.36 MGGLDRSQTSSNSMQRVKVYRLNDDGKWDDQGTGHVTVDYMERSEELGLFVIDEEDNETLLLHRISSDDIYRKQEDTIISWRDPEYSTELALSFQEATGCSFIWDNISSVQRNLQFSTLSNETFHSVTSELRELPTVELSTLPLILKTVVESGIADQMSSCHFEEQHVGGKKAAWSRKLMNLFRICEDLENSDGLYMIFKIVRGIVLLNSPQIFEKIFHDDLIMDIIGSLEFDMDLVIGLLLFIYTLEHLVLYFGTPCLKNIAVIAMNSYLQTVLCCFCYLALDDPEVPHTQQFRNFLKEHVVFKEAIRIKSPAILSKIHQTYRVGYLKDVVLARMLDDSVVANLNSIIHANNVLVVTSLKDDSTFIQELFARLRSPSTPDDSKKDLVYFLHEFCSVSKSLQMAMQLRLFRDLMNEGIFDIITDVLQSPDKKLVLTGTDILILFLNQDPNLLRTHVARQEGFPLFGLLIKGMVTDFGDNMHCQFLEILRNLLDTYALPGVQRDTIVEIFYEKHLGQLIDIITASCPTEGLQSGKNIEDADGRLGDTNGVKPEILSNICELLCFCVLQHPYRIKSNFLQNNIIDKVVLLTQRKEKYLVVAAVRFIRTVLSRHDEHLISYFVKNNTLKPIIDVFVANGSRYNLLNSAVLELLEYIKKLSRFENLSSIQALKVKYDQCLENCEMKGTLNTSDPRKRNDERAPEKEEDDYFNGDSDEDDTASASVARKQNEQSQPGLSNGVTTNCPPVRSGGLVDYEDDEDDEDYRPPQRKQPDTSDKDIEIMEVLWHKRKLAPQEEPEIVKKQRLVRKHKPKDGVLASLCTTLSQAVLPGKKTTNATETSSCMPYENKSSVEESHETNHAIPSSSSDGSSSNSDEENRRENKSTASKGYSNSSVLHVTSENQQLGGDDYPLIPTKSSPEMTVNGSIIEDEDVLLYSATERYSLKFTSSMFTLVSCFSIFYKMSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRHQPPEQLGVLNTDFSFVIAVDVKDKEYCIHK 1100
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10933186 10949852 + CmoCh06G015550.1 Cmo06g01555 385117

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01555 1100 Pfam Transcription factor S-II (TFIIS) 1033 1070 IPR001222 GO:0003676|GO:0006351|GO:0008270
Cmo06g01555 1100 MobiDBLite consensus disorder prediction 828 891 - -
Cmo06g01555 1100 SUPERFAMILY Zinc beta-ribbon 1010 1073 - -
Cmo06g01555 1100 CDD Zn-ribbon_RPB9 1022 1069 IPR034012 GO:0006379
Cmo06g01555 1100 PANTHER ATP SYNTHASE GAMMA-RELATED 2 236 - -
Cmo06g01555 1100 SUPERFAMILY PH domain-like 15 110 - -
Cmo06g01555 1100 MobiDBLite consensus disorder prediction 760 775 - -
Cmo06g01555 1100 MobiDBLite consensus disorder prediction 828 845 - -
Cmo06g01555 1100 Gene3D - 959 1004 - -
Cmo06g01555 1100 Gene3D - 10 128 IPR011993 -
Cmo06g01555 1100 PANTHER ATP SYNTHASE GAMMA-RELATED 273 839 - -
Cmo06g01555 1100 ProSiteProfiles Zinc finger TFIIS-type profile. 1030 1071 IPR001222 GO:0003676|GO:0006351|GO:0008270
Cmo06g01555 1100 Gene3D - 363 687 IPR011989 -
Cmo06g01555 1100 PANTHER BINDING PROTEIN-RELATED 273 839 - -
Cmo06g01555 1100 SMART rpol9cneu 963 1016 IPR001529 GO:0006351
Cmo06g01555 1100 Pfam RNA polymerases M/15 Kd subunit 962 994 IPR001529 GO:0006351
Cmo06g01555 1100 SUPERFAMILY ARM repeat 179 655 IPR016024 -
Cmo06g01555 1100 MobiDBLite consensus disorder prediction 686 704 - -
Cmo06g01555 1100 Pfam Phosphatase 4 regulatory subunit 3 176 236 IPR006887 -
Cmo06g01555 1100 Pfam Phosphatase 4 regulatory subunit 3 268 413 IPR006887 -
Cmo06g01555 1100 ProSitePatterns RNA polymerases M / 15 Kd subunits signature. 964 990 IPR019761 -
Cmo06g01555 1100 SUPERFAMILY Zinc beta-ribbon 959 1006 - -
Cmo06g01555 1100 MobiDBLite consensus disorder prediction 853 868 - -
Cmo06g01555 1100 SMART Cys4_2 1032 1072 IPR001222 GO:0003676|GO:0006351|GO:0008270
Cmo06g01555 1100 Gene3D - 1005 1071 - -
Cmo06g01555 1100 MobiDBLite consensus disorder prediction 721 742 - -
Cmo06g01555 1100 MobiDBLite consensus disorder prediction 682 775 - -
Cmo06g01555 1100 PANTHER BINDING PROTEIN-RELATED 2 236 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01555 K17491 SMEK, PPP4R3; protein phosphatase 4 regulatory subunit 3 - csv:101210978 1351.65
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01555 Cmo17g00353 CCT
Cmo06g01555 Cmo08g01239 CCT
Cmo06g01555 Cmo14g01627 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g01627 Cmo-Chr14:12917861 Cmo06g01555 Cmo-Chr6:10933186 0 wgd
Cmo17g00353 Cmo-Chr17:2148151 Cmo06g01555 Cmo-Chr6:10933186 0 wgd
Cmo06g01555 Cmo-Chr6:10933186 Cmo08g01239 Cmo-Chr8:7838751 1.79E-71 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g88 Blo01g00051 . . Bda08g00314 . Bpe14g01103 . Bma05g01015 Cmo08g01239 Cmo17g00353 Cma06g01556 Cma14g01597 Car06g01321 Car14g01409 . Cpe08g00157 Cpe03g01335 Bhi01g01080 . . Lac11g0927 . . Lcy11g1349 Cla06g00434 Cam06g0461 Cec06g0467 Cco06g0466 Clacu06g0448 Cmu06g0449 Cre06g1225 . . Cone7ag0106 Cone4ag0109 Lsi05g01584 Csa06g01744 Chy11g01562 Cme06g00778 Blo02g00481 . . Bda13g00212 Bpe05g00814 . Bma02g00925 . . Cmo06g01555 Cmo14g01627 Cma08g01270 Cma17g00363 Car08g01140 Car17g00336 Cpe12g00315 Cpe17g00061 Bhi12g01920 . . . . . Lcy12g0798 Cla05g00694 Cam05g0761 Cec05g0769 Cco05g0765 Clacu05g0752 Cmu05g0717 Cre05g0792 Lsi09g01483 Csa03g01510 Chy06g00746 Cme11g02073
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001634 1 6 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 1 2 2 2 2 2 4 2 1 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01555 Cmo_Chr06 FPKM 9.178366 9.511782 21.965611 22.378061 2.82707 3.065702 3.062507 36.798237 37.108059 35.46114