Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01556 ATGACTAATATGGCTCTTCGAAAGTTTGTTTATGGTGATACACCTTCCATTAACTTGAAACGTTCAAGTCTCCCCATTAAGGCGCATCAGCAAACTCAATTTGAAGAACTTGAAACTAACCAGACGTCAGAGCCTGATGTAGAAATTGACCTTAGAGAAGTTTATTTTCTTATCATGCACTTTCTTTCATCTGGGCCATGTCATAGAACTTGTGGGCTGCTCTGGGATGAGCTTTTCGAACATCAGCTTTTACCCCGACGATATCATGCTTGGTTTTCTAGAAATGGGATGCAAAGTGGGCATGAAAATGATGATGGCTTGTCATTTCCTTTAAAGTACCAACACTTGGTGGAGAGGTATTCACATGTCGATAAGGACCACCTGATAAAACTTTTGAAGCAATTGATGCTTAACAAGGCCTCTCCATCTAGAGGTATGAATGGTGCAATTGCTCCAAATGCAGCTGACGTGCCTACATTATTAGGAACGGGCACATTTTCACTTCTGAGCTATGATAAAAATGAGGGAGCTAGCAAGCCAAGTGGTCCCCCAGCACACATGCGTTGGCCTCATATGAAAGCTGATTCTGTTCGTGGATTAAGTTTGAGAGAAATTGGAGGTGGTTTCTCCCGACATCAACGTGCACCTTCTGTACGTGCAGCATGTTATGCAATTGCTAAGCCGTCAACAATGGTGCAGAAAATGCAAAACATAAAGAGGCTACGAGGGCATCGGAATGCTGTCTATTGTGCAATTTTTGATCGCATGGGAAGATATGTGATAACTGGTTCAGATGATCGCCTTGTAAAGATTTGGTCAATGGAAACTGCATATTGCTTGGCAAGCTGCCGAGGACATGAGGGTGATATCACTGATCTGGCTGTAAGTTCTAACAATGCTGTGGTGGCATCATCTTCAAATGATTTTGTTATCCGTGTTTGGCGCTTGCCTGATGGGCTACCAATTTCAGTCTTGCGAGGACATACTGGTGCTGTTACTGCCATTGCCTTCAGTCCCAGAGCTGCATATCAGCTTCTTTCGTCGTCAGATGATGGAACATGTAGGATATGGGATGCTCGGAGCTCTTCCCAGAGTGCTCCTCGGATTTATGTTCCAAGGCCTTCGGACTCAGTGACTGCTGCAGCAAGAAACAGTGGCTCTTCCGTGAGTACTCTTCCTCAGAGCCATCAAATATTTTGCTGTGCATTTAATGCTTGTGGAACTATTTTTGTTACTGGTAGTTCTGACAGTTTAGCCAGGGTATGGAGTGCCTATAAAGGAAATAATGATAACCCAGACCAACCAAATCATGAGATTGATGTGTTGGCTGGCCATGAGAATGATGTCAACTATGTGCAATTCAGTGGATGTGCAGTAGCATCAAGATTTACAACAACTGACATTGTGAAGGAAGACAATGTTCACAAGTTCAAAAACTCCTGGTTCACTTACGACAATATAGTTACTTGTTCTCGTGATGGCAGTGCAATTATTTGGGTTCCAAGATCACGTAGGTCACATGGGAAGGTTGGCCGCTGGACCCATGCATACCATTTAAAAGTGCCACCTCCACCCATGCTTCCACAGCCTGCTCGAGGCGGTCCTCGTCAGAGGATTCTTCCTACTCCTCGTGGTGTAAATATGATAATTTGGAGTCTAGACAATCGTTTCGTCTTAGCAGCTATAATGGATTGTAGAATTTGTGTTTGGAATGCTTCTGATGGAAGCTTAGTGCACTCTTTGACTGGTCATACTGAATCTACGTATGTACTCGATGTTCATCCTTCTAATCCAAGGATTGCTATGAGTGCTGGATATGATGGGAAAACAATAGTTTGGGATATTTGGGAAGGCACACCAATTCGGATATATGAAATTTCTCATTTCAAACTGGTCGATGGCAAGTTTTCATCAGATGGGACATCAATTATACTTTCAGATGATGTTGGACAGCTATATATATTAAGCACAGGGCAAGGAGAATCCCAACAGGATGCCAAGTATGATCAGTTCTTTCTCGGTGACTATCGCCCACTTATTCAGGATCCTTCTGGCAATGTCGTTGACCAGGAAACTCAACTCACTACTTACAGGCGGAATTTGCAAGATCTCCTTTCTGACTCAGGCATGATACCTTATCCAGAACCTTATCAGACTGCATACCAGCAAAGGCGTTTGGGTGCCATGGGTCTTGACTGGCGTCCATCTTCTCTAAAACTTTCTGTTGGTCCCGACTTCAATCTCGACCCAGATTACCAATTGTTGCCTTTGGCAGACTTGGACATGTTGATTGAACCATTGCCTGAGATTGTAGATGCAATGGATTGGGGACCAGAAAATGAAGTACAAAGCGACGATACCGATTCAGAATATAATGTCCCTGAAGATTATTCTACTGGTGGGGAGCAAAGAAGTCTAAATTCGAACTGCTCAACGGATCCAGAATGCAGCTCTGAAGACACAGGGATCGACGATGCCCCTGCTGATGGTCTTCGAAGATCAAATAGGAAAAAACAGAAAGCAGACATGGAGGTCATGACTTCTTCAGGAAGGCGTGTTAAAAGACGGAATATGGACGAGTATGAAGGTGATATAGTTAGGAGTTCCAGAAGCCAGAAGTCGAAATCTGGCCATAAGCCTTCCAAAAAAAAATCAGCATCTAAGTTGTTAAGACCTCAAAGAGCTGCTGCACGTAATGCTCGTAATTGGATATCATCATTTAAGGGAAAATCTACAGATGGAGAAGATGAATACGAATCGGGAGGTGATTGCTCAGAAAGTGAATCTACATTAGAAGATTCAGACATCGAGAGCGATGAATACAAAAGGTCATTGCAAAACAGAAATAAGCATTCAAAAGGGAAAGAAGTATTCGTAGATGGAACCGAGGAGATGACAAAATCTCTTGATGTTCCTGAATCTCGTGTGGATGTTGGAAACCGAAAGAAGTTGATTCTTAAATTCTCCCTTCGGAATCCGAATAAGGTCGATCCTCCTTTAAACACAACACTTACTTGTTCCAACATGGCTGTTGTGCCTAGCTCATCATCAAGGTCCCCAAAGGAAGATATTGAAACCAGTCAGATTCTTATGAGACCAGAGAGGCAATTTGGAAATACTGATGGACATTCTGATCTGACCGAGGTCTACACAAATGGGAACATAAGATGGGGAGGTTCCAGGGTTCGTTCATCAAAGCGCATAAGATTAGGCGAAACTATGCCTTCTGAGGCATATGCTGCAATGTCTAGTTCGCTTCCCGATGGCTATCATAATGAAAATGAGAACGACGTTCGTGAATCTTTAGAACAAGAAAATCATTTTGGTACTCCATCCCCCCATTCAAAGTTGGAGAATTATTGTGCAGAGAAAATGGGCGATGGGGATGATGATGCTTCTGGGCAATCTCAGGAGGTTATCAACGGTGGAGACGTTAAACGTGTCAACAGTAAGTCGAGTGATCACGATGATTCAAATAATTTGAATTTAATGTTTCCTTCAGATGCAACGATCACATCGGTTCAAAATGGGACCACTGCTTCTGAGCAAACTGGAAATATTGCACCAATGCGTGCAAAGATCAGGTTGAGGAGTGTTTCTTTGGACCCTGAACATTCTCTGAAGCACAAAATAGAATCCTTAGATGAAAGCTCAAAGAACGATGAATACAATACGGTGCTCGGAAGCCCTCGGCATCTGAATGGGCTGCAGGAGGATGTCATGAATGGAGCTTATTCTGATCATAGAAATGATTCCCCACAAGATATAGATACTCCAAATGATGAAAAACTAATGTCAACCTTGTGCAACTCTGATGAGTTGCAAGCAGTAGAGGCTAACAAAATGTTCACTGCTGTTTATAGAAGATCGAAGTCGAACAAAGGGAAGAGTAATGCAGAAAGCAACGGTTGTGGCTCAGGTGAAAATGCTTCGGGCAACGTTAGTCTACCTGCTGAAGCAAACAATCACAAAAGTATGCCTCGTAAGACACGATCTTCGAGGTTTAAGGATGCCTCATATGATCTAAATAATGTGGGTGACGATCTTAAATCGGACGAAGATCAGGAATCTGAACATAGATCAAGACGTTCTGCAAACTCTTCTGCAAACAGATCCCATATACCAAATGAAGAGTGGGGATCAAGCTCAAGGATGACAGTTGGATCGAGATCCACTCGTAACAGGAGTAGTTTTACTCAAGACATAAATCCTGTGGAAAGAAGAAAGTCAGTTCAATATGCCCGAAAAGGATCGTGGTTAATGATGCCCGCACATGAGGGTGGCTCCAGATATATTCCCCAACTTGGCGACGAAGTTGCGTATTTGAGGCAGGGCCATCAAGAATACATAGATCACTGTTGTACAAATTACTATCACACAAAAGACACCGGACCTTGGACCTCAATCCGGGGTCCTGTACGAGCGGTTGAGTTCTGTAAGGTTGTCGAGCTTGTTTATTCTACTTCTGCAGGTTCTGGAGATAGTTGCTGTAAAATGCTACTCAAGTTCATAGATCCTACTTCCCATGTATACCTACAATCTTTGAAGTTAACTCTGCCCGAGTTGACTAGTTTCCCCGACTTCTTAGTCGAAAGAACTCGGTTTGAAGCGGCAATGCAGAGGAATTGGACATTCAGGGATAAGTGCAAAGTGTGGTGGAAAAACGACGTCGGAGTAGATGGTAGTTGGTGGGATGGTCGGATTGTCTCCGTGCAGGCAAAATCTTCGGAGTATCCAGAAAGTCCTTGGGAGAGGTACACAATTAAGTATAGGAGTGATCCTGCAGAACCACATTTACATAGTCCTTGGGAGCTGTATGATACTGTTACTCAGTGGGATCAGCCTCGAATAGACGACGAAAACAAAGCGAAGTTGTTAACTGCCTTCGACCAATTAACGTCGACTTCTATGCAGGGTCGTTACGGGATTCAAGATTTGATGCTTCTCGCACGAAAGACACAATACAAGAACAGGTTTCCTGTACCATTGTGCCTTGAGATAATCCAAGAAAGATTACAGAATGATTACTACCGTAGCTTGGAAGCTTTGAAGCATGACTTCATGGTAATGCTATCAAATTTCGAGTCATTCGTGGCAAAGAATGAGAACATGTCGAAGAAAATTAGACGATTGTCGGACTGGTTTAGTCGCAACATATCACCGTTGTAG 5169 43.18 MTNMALRKFVYGDTPSINLKRSSLPIKAHQQTQFEELETNQTSEPDVEIDLREVYFLIMHFLSSGPCHRTCGLLWDELFEHQLLPRRYHAWFSRNGMQSGHENDDGLSFPLKYQHLVERYSHVDKDHLIKLLKQLMLNKASPSRGMNGAIAPNAADVPTLLGTGTFSLLSYDKNEGASKPSGPPAHMRWPHMKADSVRGLSLREIGGGFSRHQRAPSVRAACYAIAKPSTMVQKMQNIKRLRGHRNAVYCAIFDRMGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAVVASSSNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRAAYQLLSSSDDGTCRIWDARSSSQSAPRIYVPRPSDSVTAAARNSGSSVSTLPQSHQIFCCAFNACGTIFVTGSSDSLARVWSAYKGNNDNPDQPNHEIDVLAGHENDVNYVQFSGCAVASRFTTTDIVKEDNVHKFKNSWFTYDNIVTCSRDGSAIIWVPRSRRSHGKVGRWTHAYHLKVPPPPMLPQPARGGPRQRILPTPRGVNMIIWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTESTYVLDVHPSNPRIAMSAGYDGKTIVWDIWEGTPIRIYEISHFKLVDGKFSSDGTSIILSDDVGQLYILSTGQGESQQDAKYDQFFLGDYRPLIQDPSGNVVDQETQLTTYRRNLQDLLSDSGMIPYPEPYQTAYQQRRLGAMGLDWRPSSLKLSVGPDFNLDPDYQLLPLADLDMLIEPLPEIVDAMDWGPENEVQSDDTDSEYNVPEDYSTGGEQRSLNSNCSTDPECSSEDTGIDDAPADGLRRSNRKKQKADMEVMTSSGRRVKRRNMDEYEGDIVRSSRSQKSKSGHKPSKKKSASKLLRPQRAAARNARNWISSFKGKSTDGEDEYESGGDCSESESTLEDSDIESDEYKRSLQNRNKHSKGKEVFVDGTEEMTKSLDVPESRVDVGNRKKLILKFSLRNPNKVDPPLNTTLTCSNMAVVPSSSSRSPKEDIETSQILMRPERQFGNTDGHSDLTEVYTNGNIRWGGSRVRSSKRIRLGETMPSEAYAAMSSSLPDGYHNENENDVRESLEQENHFGTPSPHSKLENYCAEKMGDGDDDASGQSQEVINGGDVKRVNSKSSDHDDSNNLNLMFPSDATITSVQNGTTASEQTGNIAPMRAKIRLRSVSLDPEHSLKHKIESLDESSKNDEYNTVLGSPRHLNGLQEDVMNGAYSDHRNDSPQDIDTPNDEKLMSTLCNSDELQAVEANKMFTAVYRRSKSNKGKSNAESNGCGSGENASGNVSLPAEANNHKSMPRKTRSSRFKDASYDLNNVGDDLKSDEDQESEHRSRRSANSSANRSHIPNEEWGSSSRMTVGSRSTRNRSSFTQDINPVERRKSVQYARKGSWLMMPAHEGGSRYIPQLGDEVAYLRQGHQEYIDHCCTNYYHTKDTGPWTSIRGPVRAVEFCKVVELVYSTSAGSGDSCCKMLLKFIDPTSHVYLQSLKLTLPELTSFPDFLVERTRFEAAMQRNWTFRDKCKVWWKNDVGVDGSWWDGRIVSVQAKSSEYPESPWERYTIKYRSDPAEPHLHSPWELYDTVTQWDQPRIDDENKAKLLTAFDQLTSTSMQGRYGIQDLMLLARKTQYKNRFPVPLCLEIIQERLQNDYYRSLEALKHDFMVMLSNFESFVAKNENMSKKIRRLSDWFSRNISPL 1722
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10949682 10961784 - CmoCh06G015560.1 Cmo06g01556 385118

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01556 1722 MobiDBLite consensus disorder prediction 793 817 - -
Cmo06g01556 1722 CDD WD40 237 614 - -
Cmo06g01556 1722 Pfam Bromodomain 1653 1705 IPR001487 GO:0005515
Cmo06g01556 1722 Gene3D - 395 526 IPR015943 GO:0005515
Cmo06g01556 1722 ProSitePatterns Trp-Asp (WD) repeats signature. 601 615 IPR019775 -
Cmo06g01556 1722 PANTHER PH-INTERACTING PROTEIN-LIKE ISOFORM X1 43 1721 - -
Cmo06g01556 1722 SMART bromo_6 1618 1721 IPR001487 GO:0005515
Cmo06g01556 1722 ProSiteProfiles Trp-Asp (WD) repeats profile. 581 623 IPR001680 GO:0005515
Cmo06g01556 1722 Gene3D - 536 670 IPR015943 GO:0005515
Cmo06g01556 1722 SUPERFAMILY Bromodomain 1654 1719 IPR036427 GO:0005515
Cmo06g01556 1722 MobiDBLite consensus disorder prediction 1289 1320 - -
Cmo06g01556 1722 MobiDBLite consensus disorder prediction 1243 1263 - -
Cmo06g01556 1722 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 283 316 - -
Cmo06g01556 1722 Gene3D - 1635 1722 IPR036427 GO:0005515
Cmo06g01556 1722 MobiDBLite consensus disorder prediction 1367 1406 - -
Cmo06g01556 1722 ProSitePatterns Trp-Asp (WD) repeats signature. 345 359 IPR019775 -
Cmo06g01556 1722 MobiDBLite consensus disorder prediction 936 959 - -
Cmo06g01556 1722 Gene3D - 214 394 IPR015943 GO:0005515
Cmo06g01556 1722 MobiDBLite consensus disorder prediction 825 871 - -
Cmo06g01556 1722 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 241 276 - -
Cmo06g01556 1722 MobiDBLite consensus disorder prediction 1289 1407 - -
Cmo06g01556 1722 ProSiteProfiles Trp-Asp (WD) repeats profile. 283 324 IPR001680 GO:0005515
Cmo06g01556 1722 MobiDBLite consensus disorder prediction 1126 1162 - -
Cmo06g01556 1722 ProSiteProfiles Trp-Asp (WD) repeats profile. 241 282 IPR001680 GO:0005515
Cmo06g01556 1722 MobiDBLite consensus disorder prediction 872 889 - -
Cmo06g01556 1722 MobiDBLite consensus disorder prediction 778 959 - -
Cmo06g01556 1722 ProSiteProfiles Trp-Asp (WD) repeats profile. 325 367 IPR001680 GO:0005515
Cmo06g01556 1722 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 325 361 - -
Cmo06g01556 1722 Pfam WD domain, G-beta repeat 236 273 IPR001680 GO:0005515
Cmo06g01556 1722 Pfam WD domain, G-beta repeat 279 314 IPR001680 GO:0005515
Cmo06g01556 1722 Pfam WD domain, G-beta repeat 575 614 IPR001680 GO:0005515
Cmo06g01556 1722 Pfam WD domain, G-beta repeat 321 358 IPR001680 GO:0005515
Cmo06g01556 1722 Pfam WD domain, G-beta repeat 395 423 IPR001680 GO:0005515
Cmo06g01556 1722 SMART WD40_4 234 273 IPR001680 GO:0005515
Cmo06g01556 1722 SMART WD40_4 318 358 IPR001680 GO:0005515
Cmo06g01556 1722 SMART WD40_4 276 315 IPR001680 GO:0005515
Cmo06g01556 1722 SMART WD40_4 574 614 IPR001680 GO:0005515
Cmo06g01556 1722 SMART WD40_4 385 423 IPR001680 GO:0005515
Cmo06g01556 1722 SMART WD40_4 435 500 IPR001680 GO:0005515
Cmo06g01556 1722 SMART WD40_4 533 571 IPR001680 GO:0005515
Cmo06g01556 1722 MobiDBLite consensus disorder prediction 1331 1365 - -
Cmo06g01556 1722 SUPERFAMILY WD40 repeat-like 232 657 IPR036322 GO:0005515
Cmo06g01556 1722 CDD Bromo_WDR9_I_like 1598 1720 - -
Cmo06g01556 1722 MobiDBLite consensus disorder prediction 918 935 - -
Cmo06g01556 1722 PANTHER WD REPEAT DOMAIN 9 43 1721 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01556 K11797 PHIP, DCAF14; PH-interacting protein - csv:101214610 3023.42
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01556 Cmo14g01626 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01556 Cmo-Chr6:10949682 Cmo03g00906 Cmo-Chr3:6970358 9.61E-08 dispersed
Cmo14g01626 Cmo-Chr14:12904619 Cmo06g01556 Cmo-Chr6:10949682 2.76E-58 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g84 . . . . . . . . . . Cma06g01559 Cma14g01594 Car06g01323 Car14g01407 Sed12g0779 Cpe08g00155 Cpe03g01333 Bhi01g01082 Tan10g1069 Cmetu06g1713 . Hepe05g1390 . Lcy11g1346 . . . . . . . . . Cone7ag0105 Cone4ag0108 Lsi05g01586 . . Cme06g00781 Blo02g00479 Blo07g00153 Bda11g00507 Bda13g00214 . Bpe13g00691 Bma02g00927 . . Cmo06g01556 Cmo14g01626 . . . . . . . . . . . . . Cla05g00697 Cam05g0765 Cec05g0774 . . Cmu05g0720 . . Csa03g01511 Chy06g00747 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004915 2 1 2 1 1 1 2 1 1 1 1 1 3 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01556 Cmo_Chr06 FPKM 11.06427 11.577916 14.513129 14.253844 14.541335 12.729327 15.176027 21.069788 20.788233 20.586494
Cmo06g01556 Cmo_Chr00 FPKM 8.877962 8.29788 9.516894 9.046145 8.516763 7.018732 9.779432 13.180352 11.919515 12.232777