Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01559 ATGCAAGTCTTCTCTTCATCTCCTTCAACCACAAGCTTCAATCTGTTCTCTTCATCTCAAAATCCGAACAATCTCTCGAAATACAGATGCAAAAATTTGATTATATCTCTCCATTTCGCTCCGAGTTCCCTCTCCGTTTGCTGTTCTTCGAGGGAGTCCTCGACGGCGGTTCTCTCCTCCGATCTTTCGTTGGACGGCGAGAACAGAGAGGCGTCGGAGGAGGTTCTTAGAGTTCGGCGGCCGGTAATGGAGTTTACCGGTGAAGATTCCGGCGACGGCGAGGAGGCGGAAGATGAGAGGAGTTCTTCGGTGATAGAACTAGGGCTAGCGGAGATTGCGAAGAAGATGCCGATATTTGAACCGGAGAATCGGGTGGATTCGAGTGCCCTAGAAAGGCCGCTGATTATCAATTTGGATTTGGCGTTGTACAAAGCGAAGATGATGGCGAGGAATTTTCTGTATGATGAAGCACGGCAAGTCCTTCAGAAGTGTATAGATAAATGGCCGGAGGATGGGCGGGCATACGTAGCATTGGGGAAGATGTTGAGCAAGCAAATGAAAGCCGCCGACGCCAGAGCTGTGTATGAGAGAGGCTGCCAAGCCACCCAAGGCGAGAACTCCTACATTTGGCAGTGCTGGGCTGTTCTGGAGAGCAGGATGGGGAATATCAGGAAAGCAAGAGAGCTCTTTGATGCAGCCACAGTAGCCAACAAGAAGCACATTGCCGCATGGCATGGCTGGGCTGTGCTAGAGCTAAAGCAGGGGAACCTCAAGAAGGCCAGGAATCTACTAGCCAAAGGCCTCAAATACTGTGGTGGGAATGAGTATATCTATCAAACACTCGCCCTGCTCGAAGCCAAATCGAATCGCTACGAGCAAGCGCGTTATTTGTTTAAGCAGGCTACCAAGTGCAACCCCAAAAGCTGTGCTAGTTGGCTTGCATGGGCGCAGCTGGAGATGCAGCGGGAGAACAATCTTCTTGCTAGACAACTGTTTGAGAAAGCCATCCAGGCGAGCCCCAAGAACAGATTTGCGTGGCACATATGGGGGCTCTTTGAAGCTAATATAGGAAATATCGAGAAGGGAAGGAAACTTTTAAAGATAGGCCATGTCCTAAATCCAAGAGACCCTGTTCTTCTTCAGTCTCTTGGTTTATTAGAGTATAAGAACTCCTCTGCAAGCATGGCTCGAGTTTTGTTTAGGAGAGCATCTGAACTGGACCCCAAGCACCAACCAGTGTGGATTGCTTGGGGATGGATGGAATGGAAAGAAGGTAACATAGGGAAAGCAAGGGAGCTGTATCAAAGAGCATTGTTGATTGACTCAGCTAGTGAGAGTGCAGCTCGATGCCTTCAGGCTTGGGGTGTTCTAGAACAGAGAGCAGGCAACCTATCAGCAGCTAGAAGATTATATAGATCCTCTCTAAGCATAAACTCTCAGAGTTATGTAACATGGATGACCTGGGCAGCACTGGAAGATGATCAAGGGAACGCAATCCGAGCGGAGGAAATTCGAAATCTATACTTCCAGCAGAGAACAGAAGTTGTGGACGATGCTTCGTGGGTTATGGGGATCTTAGACGTTATTGACCCAGCACTTGATAGCATAAAGAGGCTGTTGAAGCTGGAGCAAGACCCCTTCGCCATGTCAAGAGTAGCAGATGGAGGCGCTAGAAGCAGCTCTTTAGACGACTCAGCTGCCTCCTCTAGTGTGGCTGACAGTGAAACTGGGTTTGATTTGGATGCCTTTATGATGAAAAAGTTGTCGATAGACACGTCGAAACTCGAAATTCAACTCGAAACAGCTCAACCCAAAAGATTTAAGTATCAAAGAAGTCAAATGAGATCAGAAAACAGACCAGAGATGGCTGTTCCACAGAGCCAAAGAACAGCATCTTCATCTACTTGA 1908 48.22 MQVFSSSPSTTSFNLFSSSQNPNNLSKYRCKNLIISLHFAPSSLSVCCSSRESSTAVLSSDLSLDGENREASEEVLRVRRPVMEFTGEDSGDGEEAEDERSSSVIELGLAEIAKKMPIFEPENRVDSSALERPLIINLDLALYKAKMMARNFLYDEARQVLQKCIDKWPEDGRAYVALGKMLSKQMKAADARAVYERGCQATQGENSYIWQCWAVLESRMGNIRKARELFDAATVANKKHIAAWHGWAVLELKQGNLKKARNLLAKGLKYCGGNEYIYQTLALLEAKSNRYEQARYLFKQATKCNPKSCASWLAWAQLEMQRENNLLARQLFEKAIQASPKNRFAWHIWGLFEANIGNIEKGRKLLKIGHVLNPRDPVLLQSLGLLEYKNSSASMARVLFRRASELDPKHQPVWIAWGWMEWKEGNIGKARELYQRALLIDSASESAARCLQAWGVLEQRAGNLSAARRLYRSSLSINSQSYVTWMTWAALEDDQGNAIRAEEIRNLYFQQRTEVVDDASWVMGILDVIDPALDSIKRLLKLEQDPFAMSRVADGGARSSSLDDSAASSSVADSETGFDLDAFMMKKLSIDTSKLEIQLETAQPKRFKYQRSQMRSENRPEMAVPQSQRTASSST 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10980938 10985593 - CmoCh06G015590.1 Cmo06g01559 385121

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01559 635 MobiDBLite consensus disorder prediction 606 635 - -
Cmo06g01559 635 SUPERFAMILY TPR-like 373 499 IPR011990 GO:0005515
Cmo06g01559 635 MobiDBLite consensus disorder prediction 616 635 - -
Cmo06g01559 635 Gene3D Tetratricopeptide repeat domain 134 301 IPR011990 GO:0005515
Cmo06g01559 635 Gene3D Tetratricopeptide repeat domain 302 472 IPR011990 GO:0005515
Cmo06g01559 635 PANTHER PROTEIN HIGH CHLOROPHYLL FLUORESCENT 107 5 616 IPR044624 GO:0003729|GO:0006397
Cmo06g01559 635 SUPERFAMILY TPR-like 156 387 IPR011990 GO:0005515
Cmo06g01559 635 Pfam Tetratricopeptide repeat 281 342 - -
Cmo06g01559 635 Pfam Tetratricopeptide repeat 154 201 - -
Cmo06g01559 635 ProSiteProfiles TPR repeat profile. 275 308 IPR019734 GO:0005515
Cmo06g01559 635 SMART hat_new_1 357 389 IPR003107 GO:0006396
Cmo06g01559 635 SMART hat_new_1 425 460 IPR003107 GO:0006396
Cmo06g01559 635 SMART hat_new_1 462 494 IPR003107 GO:0006396
Cmo06g01559 635 SMART hat_new_1 391 423 IPR003107 GO:0006396
Cmo06g01559 635 SMART hat_new_1 289 321 IPR003107 GO:0006396
Cmo06g01559 635 SMART hat_new_1 323 355 IPR003107 GO:0006396
Cmo06g01559 635 SMART hat_new_1 255 287 IPR003107 GO:0006396
Cmo06g01559 635 SMART hat_new_1 221 253 IPR003107 GO:0006396
Cmo06g01559 635 SMART hat_new_1 186 219 IPR003107 GO:0006396
Cmo06g01559 635 SMART hat_new_1 152 184 IPR003107 GO:0006396
Cmo06g01559 635 SMART tpr_5 207 240 IPR019734 GO:0005515
Cmo06g01559 635 SMART tpr_5 241 274 IPR019734 GO:0005515
Cmo06g01559 635 SMART tpr_5 377 410 IPR019734 GO:0005515
Cmo06g01559 635 SMART tpr_5 309 342 IPR019734 GO:0005515
Cmo06g01559 635 SMART tpr_5 172 205 IPR019734 GO:0005515
Cmo06g01559 635 SMART tpr_5 411 444 IPR019734 GO:0005515
Cmo06g01559 635 SMART tpr_5 275 308 IPR019734 GO:0005515
Cmo06g01559 635 SMART tpr_5 448 481 IPR019734 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01559 - - - csv:101215572 1057.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01559 Cmo-Chr6:10980938 Cmo12g00812 Cmo-Chr12:7206005 8.99E-08 dispersed
Cmo06g01559 Cmo-Chr6:10980938 Cmo13g00280 Cmo-Chr13:2304969 8.84E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g70 . . . . . . . . . . Cma06g01562 . Car06g01327 . Sed02g1137 Cpe08g00151 . Bhi01g01088 Tan10g1075 Cmetu06g0442 . Hepe05g1383 . Lcy11g1338 . . . . . . . . . Cone7ag0100 . Lsi05g01595 . . Cme06g00788 . Blo07g00145 Bda11g00502 . . Bpe13g00695 . . . Cmo06g01559 . . . . . . . . . . . . . . Cla05g00705 Cam05g0772 Cec05g0780 Cco05g0773 Clacu05g0762 Cmu05g0728 Cre05g0802 . Csa03g01517 Chy06g00754 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011618 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01559 Cmo_Chr06 FPKM 2.794621 3.983888 2.18603 2.74454 3.687553 3.801221 3.941637 2.729313 2.432705 2.259787