Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01560 ATGGTTTCGAGTAATCGGGGGACGAATTCGCATCAGCAACAAGCAGAGTCCTCGAACACGAACACGAACACGAGCCATATGCGATCTAATCGTACAGAATCCATCAGCAAAGCCGTAGCGCAGTACACCATCGATGCTCGTCTTCACGCAGTGTTTGAACAGTCAGGTGAGTCCGGTAAATCTTTTGACTACTCACAATCTATTAGAACTTCGACACAATCTGTGCCGGAGCAGCAAATTACGGCTTATTTATCGATGATTCAAAGGGGCGGCCATATCCAGCCCTTTGGATGTATGATAGCTATCGATGAGGAAAATTTTCGGGTTATTGCTTATAGTGAAAACACTAGGGAATTGCTTGGTCTTACTCCTCAATCAGTGCCAAATCTTGAAAAGATAGAGATTCTCACAATTGGAACTGATGTACGGAACTTGTTCACTTCCAATAGTGCAATTTTGCTTGAGAAAGCATTTGGGGCTCGAGAAATCACTTTGTTAAACCCTGTTTGGATTCATTCTAAGAGTTCTTTGAAGCCATTTTATGCTATTTTGCATAGGATTGATGTAGGAATTGTGATTGATTTAGAGCCAGCAAGAACGGAGGATCCTGCCCTTTCTATTGCTGGGGCAGTCCAATCGCAAAAGCTTGCAGTGCGTGCAATTTCTAAGCTACAAGCACTCCCTGGTGGAGATATTAAACTGTTGTGTGATACTGTGGTTGAGAGTGTTAGGGAGCTTACTGGATACGATCGAGTTATGGTGTATAAGTTTCACGAAGACGAGCACGGTGAGGTTGTAGCTGAAAGCAAGAGGCCTGACTTAGAGCCATACATTGGATTGCATTATCCTTCTACTGATATTCCTCAGGCATCGAGGTTTTTGTTTAAGCAAAACCGTGTTAGAATGATTGTCGATTGCCATGCTTCTCCAGTTCGTGTAATTCAGGCTGCAGGGCTTATGCAACCTCTTTGCTTAGTGGGTTCGACTCTTCGTGCTCCCCATGGCTGTCATTCTCAGTATATGGCCAATATGGGCTCCATTTCGTCGTTAGCAATGGCGGTTGTTATCAATAATAGCGACGACGAAGCTATTGGTGGGCGAAGTTCAACGAGGCTTTGGGGTTTGGTTGTTTGCCACCATACTTCGGCTCGGTGTATTCCGTTCCCTCTCCGGTATGCATGTGAGTTTCTAATGCAAGCATTTGGACTTCAACTTAATATGGAATTGCAATTGGCTTCACAGATGTCTGAGAAACATGTTTTGAGAACTCAAACTCTTTTATGTGACATGCTTCTTCGTGATTCCCCAACTGGCATTATTACTCAGAGTCCAAGCATCATGGACTTAGTAAAGTGTGATGGGGCAGCTCTTTACTATCAAGGGAAGTATTACCCTCTAGGCGTGACGCCAACCGAAGCCCAAATAAAGGACGTCGTGGAATGGTTGCTAGCTTTCCATGGAGATTCAACTGGTTTAAGTACAGATAGCTTGGCCGATGCTGGCTATCCAGGGGCAGCCTTGCTTGGTGGTGCAGTTTGTGGAATGGATGTTGCCTATATCACCAAAAGGGATTTTCTCTTCTGGTTCCGATCGCACACAGGAAAAGAGATCAAGTGGGGTGGCGCAAAGCATCACCCAGCGGATAAGGACGATGGTCAAAGAATGCATCCACGTTCTTCATTCAAGGCATTTTTAGAAGTAGTAAAATCCCGTAGTTTACCGTGGGAGACTGCAGAAATGGATGCTATTCACTCATTGCAGCTTATTCTTCGAGATTCATTCAAGGATAATGCTGCAATCAATTCGAAAGCCGTTGTGCATCCTCAACTAGGGGATCTCAACTTGCAAGGGATCGATGAGCTCAGCTTGGTTGCTAGAGAAATGGTCAGGTTGATCGAGACTGCAACTGCTCCAATCTTTGCTGTAGATGTCGACAGCCGTATCAATGGATGGAACGCTAAGATAGCCGAGTTGACTGGGCTTGCAGTCGAGGAAGCTATGGGGAAATCCCTAGTTCGTGATCTCGTGTATAAAGAATCTGAAGAAATAGTCGACAAACTCGTTTCCCGGGCTTTAAAAGGTGAAGAAGAAAAGAATATAGAGATAAAAATGAAGACATTTGGGCGAGATCCAGATGATCAAAGACAGCCAATTTTTGTGGCTGTCAATGCTTGTTCTAGCAGGGACTACACTGATAACATAGTAGGCGTTTGTTTTGTTGGTCAAGATCTTACCTGCCAAAAAGTGTTCATGGACAAATTTATTAGCATACAATGTGATTATAAAGCCATTGTTCATAGTCCCAGTCCTCTTATCCCTCCAATATTCGCTTCGGACGACAATACGTGTTGCTCGGAATGGAATACCGCCATGGAAAACCTCACCGGATGGTCCAGAGAAGACATAATAGGAAAAATGCTAGTAGGGGAGGTTTTTGGAGATTGTTGTAGACTGAAGGGGCCAGATGAATTGACCAAATTTATGATTGTCTTGCACGGTGCAATTGGAGGGAAGAACAATGAAAAATTCCCCTTTTCTTTTTATGACAAAAAGGGGAAATATGTGCAGGCTCTCTTGACAGCAAATAAGAGGATGAATATGGAGGGGCAGATTGTTGGAGCTTTCTGCTTTGTTCAAATTGCTAGTCTTGAATTGCAGCAAACTCTTAGAATGCAGAGGCAACAGGAGAAGAACCGGTTTGTAAGGATGAAAGAGCTGGCTTACATTTGCCAGGAAGTGAAGAGTCCTTTGAGTGGTATACGCTTTACTAACTCGCTTCTGGAGGCTACGGATTTGAGTGAAGATCAGAAGCAGTTTCTGGAGACCAGTGTTTCTTGTGAAAAGCAGATTACAATGGAGATTGAGAAGGGGGAGTTCTTACTGGGAAGTGTTATTAATGCTGTTGTTAGTCAAGCGATGTTACTACTCAGAGAAAGAAACTTACAACTGGTTCGTGATATACCAGAAGAAGTAAAGACTATGGCTGTATATGGCGATCAAGTGAGAATTCAACAGGTCTTAGCTGATTTCTTGTTGAACATGGTGCGTTACGCACCGTCTCCAGAAGGCTGGGTAGAATTACGTGTCTGTCCATTCCTGAAGCAAAACTCGGATCGACTTCGTCTCGCACACACCGAATTCAGGATTGTATGCCCTGGGGAAGGTCTACCTCCTGAGTTGATACAGGACATGTTTCACAGTGGCCGATGGGCGACTCAAGAAGGGTTAGGGTTGAGCATGTGCAGAAAGATTCTGAAGCTCATGAATGGTGAAGTCCAATACATCAGAGAATCTGAAAGATGTTATTTCTCGATCACTCTCGAACTCCCTTTAACAGAGAGAGCTCTCGGCAACATCGGTTAG 3363 44.16 MVSSNRGTNSHQQQAESSNTNTNTSHMRSNRTESISKAVAQYTIDARLHAVFEQSGESGKSFDYSQSIRTSTQSVPEQQITAYLSMIQRGGHIQPFGCMIAIDEENFRVIAYSENTRELLGLTPQSVPNLEKIEILTIGTDVRNLFTSNSAILLEKAFGAREITLLNPVWIHSKSSLKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISKLQALPGGDIKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRPDLEPYIGLHYPSTDIPQASRFLFKQNRVRMIVDCHASPVRVIQAAGLMQPLCLVGSTLRAPHGCHSQYMANMGSISSLAMAVVINNSDDEAIGGRSSTRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQMSEKHVLRTQTLLCDMLLRDSPTGIITQSPSIMDLVKCDGAALYYQGKYYPLGVTPTEAQIKDVVEWLLAFHGDSTGLSTDSLADAGYPGAALLGGAVCGMDVAYITKRDFLFWFRSHTGKEIKWGGAKHHPADKDDGQRMHPRSSFKAFLEVVKSRSLPWETAEMDAIHSLQLILRDSFKDNAAINSKAVVHPQLGDLNLQGIDELSLVAREMVRLIETATAPIFAVDVDSRINGWNAKIAELTGLAVEEAMGKSLVRDLVYKESEEIVDKLVSRALKGEEEKNIEIKMKTFGRDPDDQRQPIFVAVNACSSRDYTDNIVGVCFVGQDLTCQKVFMDKFISIQCDYKAIVHSPSPLIPPIFASDDNTCCSEWNTAMENLTGWSREDIIGKMLVGEVFGDCCRLKGPDELTKFMIVLHGAIGGKNNEKFPFSFYDKKGKYVQALLTANKRMNMEGQIVGAFCFVQIASLELQQTLRMQRQQEKNRFVRMKELAYICQEVKSPLSGIRFTNSLLEATDLSEDQKQFLETSVSCEKQITMEIEKGEFLLGSVINAVVSQAMLLLRERNLQLVRDIPEEVKTMAVYGDQVRIQQVLADFLLNMVRYAPSPEGWVELRVCPFLKQNSDRLRLAHTEFRIVCPGEGLPPELIQDMFHSGRWATQEGLGLSMCRKILKLMNGEVQYIRESERCYFSITLELPLTERALGNIG 1120
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10988616 10994777 + CmoCh06G015600.1 Cmo06g01560 385122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01560 1120 Pfam Phytochrome region 422 597 IPR013515 GO:0006355|GO:0009584
Cmo06g01560 1120 TIGRFAM sensory_box: PAS domain S-box protein 631 745 IPR000014 -
Cmo06g01560 1120 SUPERFAMILY GAF domain-like 417 595 - -
Cmo06g01560 1120 SUPERFAMILY PYP-like sensor domain (PAS domain) 629 740 IPR035965 -
Cmo06g01560 1120 Gene3D PAS domain 773 885 - -
Cmo06g01560 1120 ProSiteProfiles Histidine kinase domain profile. 908 1113 IPR005467 -
Cmo06g01560 1120 ProSitePatterns Phytochrome chromophore attachment site signature. 331 340 IPR013516 -
Cmo06g01560 1120 Gene3D PAS domain 87 334 - -
Cmo06g01560 1120 Pfam PAS fold 760 879 IPR013767 GO:0006355
Cmo06g01560 1120 Pfam PAS fold 627 743 IPR013767 GO:0006355
Cmo06g01560 1120 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 961 1107 IPR036890 -
Cmo06g01560 1120 CDD HATPase_Phy-like 997 1109 IPR044767 -
Cmo06g01560 1120 CDD PAS 771 879 IPR000014 -
Cmo06g01560 1120 PRINTS Phytochrome signature 627 643 IPR001294 GO:0006355|GO:0009584
Cmo06g01560 1120 PRINTS Phytochrome signature 646 661 IPR001294 GO:0006355|GO:0009584
Cmo06g01560 1120 PRINTS Phytochrome signature 146 168 IPR001294 GO:0006355|GO:0009584
Cmo06g01560 1120 PRINTS Phytochrome signature 246 265 IPR001294 GO:0006355|GO:0009584
Cmo06g01560 1120 PRINTS Phytochrome signature 331 352 IPR001294 GO:0006355|GO:0009584
Cmo06g01560 1120 PRINTS Phytochrome signature 439 459 IPR001294 GO:0006355|GO:0009584
Cmo06g01560 1120 PRINTS Phytochrome signature 722 739 IPR001294 GO:0006355|GO:0009584
Cmo06g01560 1120 PRINTS Phytochrome signature 742 762 IPR001294 GO:0006355|GO:0009584
Cmo06g01560 1120 PRINTS Phytochrome signature 524 543 IPR001294 GO:0006355|GO:0009584
Cmo06g01560 1120 PRINTS Phytochrome signature 557 575 IPR001294 GO:0006355|GO:0009584
Cmo06g01560 1120 MobiDBLite consensus disorder prediction 1 32 - -
Cmo06g01560 1120 Gene3D - 212 570 IPR029016 -
Cmo06g01560 1120 SUPERFAMILY PYP-like sensor domain (PAS domain) 87 201 IPR035965 -
Cmo06g01560 1120 Gene3D PAS domain 617 753 - -
Cmo06g01560 1120 Gene3D - 951 1115 IPR036890 -
Cmo06g01560 1120 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 231 399 IPR016132 -
Cmo06g01560 1120 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 998 1109 IPR003594 -
Cmo06g01560 1120 SUPERFAMILY GAF domain-like 211 406 - -
Cmo06g01560 1120 CDD PAS 635 744 IPR000014 -
Cmo06g01560 1120 SMART gaf_1 231 419 IPR003018 GO:0005515
Cmo06g01560 1120 SMART HKATPase_4 998 1113 IPR003594 -
Cmo06g01560 1120 CDD HisKA 894 951 IPR003661 GO:0000155|GO:0007165
Cmo06g01560 1120 PIRSF Phytochrome_conventional 15 1117 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Cmo06g01560 1120 SMART pas_2 759 829 IPR000014 -
Cmo06g01560 1120 SMART pas_2 626 693 IPR000014 -
Cmo06g01560 1120 ProSiteProfiles PAS repeat profile. 760 812 IPR000014 -
Cmo06g01560 1120 PANTHER TWO-COMPONENT HISTIDINE KINASE 8 1114 - -
Cmo06g01560 1120 Pfam GAF domain 231 409 IPR003018 GO:0005515
Cmo06g01560 1120 ProSiteProfiles PAS repeat profile. 624 695 IPR000014 -
Cmo06g01560 1120 SUPERFAMILY PYP-like sensor domain (PAS domain) 774 878 IPR035965 -
Cmo06g01560 1120 Pfam PAS fold 82 198 IPR013654 GO:0006355
Cmo06g01560 1120 PANTHER PHYTOCHROME 8 1114 - -
Cmo06g01560 1120 Gene3D - 414 587 IPR043150 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g01560 Cmo14g01619 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01560 Cmo-Chr6:10988616 Cmo18g00427 Cmo-Chr18:2811865 0 dispersed
Cmo14g01619 Cmo-Chr14:12864015 Cmo06g01560 Cmo-Chr6:10988616 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01560 K12121 - csv:101212197 2048.48