Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01561 ATGTTTCCCGTTTTCGACCTCCTTCCCCGACAGAGGAACACAATATATGCACGTGTAGATTCAGCTCTTCACCGAGTCCGAGATACATCAGAGGCTGTCCAATCCTTTGCAGCAGAACATCTAAAAACTCCACTTGGCGAACCAGTAAAAGGAAAGAAGAACAAGACAACAACCGATAACCTCGAGGAACAGCTCGTGGATCTGTCATCGCTATTATACGACCATCATTTACAAGATGCAGATTGGAACAGCTCGGAAATATTCCAGAGCTCCATTTTTACACAGCAGTACGTGGACTATGTGTTGATCGAAGAGAGGGAGAAGATGAAGTGCTGCAGCATTCAGTATAAATACCCAGTGGAGTCGTCTCAGAATTACATGTATGGAGGAATTCTTCTAGCTGGGTTTGTAGTTTACTTTCTTGTCATCTTCTTTTCATCACCAGCCCGCTAA 453 44.15 MFPVFDLLPRQRNTIYARVDSALHRVRDTSEAVQSFAAEHLKTPLGEPVKGKKNKTTTDNLEEQLVDLSSLLYDHHLQDADWNSSEIFQSSIFTQQYVDYVLIEEREKMKCCSIQYKYPVESSQNYMYGGILLAGFVVYFLVIFFSSPAR 150
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11002632 11004264 + CmoCh06G015610.1 Cmo06g01561 385123

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01561 150 PANTHER TRANSMEMBRANE PROTEIN-RELATED 59 149 - -
Cmo06g01561 150 PANTHER BNAC01G21930D PROTEIN 59 149 - -
Cmo06g01561 150 PANTHER BNAC01G21930D PROTEIN 12 59 - -
Cmo06g01561 150 PANTHER TRANSMEMBRANE PROTEIN-RELATED 12 59 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01561 - - - cmax:111470678 253.832
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01561 Cmo14g01616 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g01616 Cmo-Chr14:12840467 Cmo06g01561 Cmo-Chr6:11002632 1.67E-76 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g54 . . . . . . . . . . Cma06g01565 Cma14g01586 Car06g01330 Car14g01396 Sed02g1134 Cpe08g00148 Cpe03g01323 Bhi01g01095 Tan10g1082 Cmetu06g1740 . . . Lcy11g1333 . . . . . . . . . . . Lsi05g01417 . . Cme06g00794 . Blo07g00138 Bda11g00497 . . . . Bma06g01462 . Cmo06g01561 Cmo14g01616 . . . . . . . . . . . . . Cla05g00711 Cam05g0777 Cec05g0785 Cco05g0779 Clacu05g0768 Cmu05g0734 Cre05g0808 . Csa03g01523 Chy06g00759 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0023634 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 2
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01561 Cmo_Chr06 FPKM 76.528641 74.731865 47.989395 46.288414 25.079195 22.548803 25.124043 30.855766 32.918682 34.673809