Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01565 ATGGAGAAAAAATTTGAAGACTCGTTGATGGGGTCGGCTACTTCTACCGGAATTTACTCTCAAACGGTGTTTTCCGACGAGTTTTCGGTGGGTGGTTCGGGTTTTTCCGGTGTGTTCGACCTGCCATGTGATGATGATCATAAAGCTTCTTGTTCTTCTTCTTCTTCTTTTGACTTGTTTGGTGGTGGGATTGGATTCCATGATTTCTATAATCCTTCTTCTATGTTCGATTTGCTTTCTACTACCGCTCCGCCCCTTCAGCCGCCGCTTTCCTCGCCGTCCTCCACCGTCCCGGAGTCCTCCGAGGTGCTTAATGCTCCAACGACGCCTAATTCTTCCTCCGTTTCTAATTCCTCCTCCAATGAAGCTGCTCCTATCGAAGAGGTTGACAAGAACGCCAAGACTTCCAAAGTGTTGAAGCCAAAGAAGAACCAGAAGAAGCAAAGAGAACCGAGATTTGCTTTTATGACAAAGAGTGATATCGATCATCTCGACGACGGTTACCGGTGGCGGAAGTACGGTCAAAAGGCCGTGAAGAACAGTCCTTATCCTAGAAGCTATTATCGTTGCACGACGTCACAATGCGGTGTGAAGAAGAGGGTGGAACGATCATCAAGCGACCATTCAATCGTCATCACAACGTACGAAGGCCAACACACCCACCAAAGTCCGGTAATGCCACGGGGAAGCATTCGAATCCTATCGGAATCCACCAATTGCCTCGTTGCCGATCACGACGTTGCCACCACCGGAATTCTATTCCAACACAACATTCCCGGCCAACCCTTCATGTATAACCCTCCGCAACCGTTTCTAACAAACGACTCGTCGTTCTTGAGTCCTCGTCCTCCTCCGTCTTCCCTTCCACCGCCATCGTTGTCGTCTCGAGCTTCCTTGCTTCAGGACAATGGGCTTCTGCAGGACTTGGTGCCATTGCAAGTGAGGAAGGAACCAAAAGATGAACAAAATGGATGA 975 49.03 MEKKFEDSLMGSATSTGIYSQTVFSDEFSVGGSGFSGVFDLPCDDDHKASCSSSSSFDLFGGGIGFHDFYNPSSMFDLLSTTAPPLQPPLSSPSSTVPESSEVLNAPTTPNSSSVSNSSSNEAAPIEEVDKNAKTSKVLKPKKNQKKQREPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTSQCGVKKRVERSSSDHSIVITTYEGQHTHQSPVMPRGSIRILSESTNCLVADHDVATTGILFQHNIPGQPFMYNPPQPFLTNDSSFLSPRPPPSSLPPPSLSSRASLLQDNGLLQDLVPLQVRKEPKDEQNG 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11028323 11029878 + CmoCh06G015650.1 Cmo06g01565 385127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01565 324 MobiDBLite consensus disorder prediction 265 297 - -
Cmo06g01565 324 SUPERFAMILY WRKY DNA-binding domain 156 224 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo06g01565 324 ProSiteProfiles WRKY domain profile. 159 224 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo06g01565 324 Gene3D WRKY domain 149 225 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo06g01565 324 SMART WRKY_cls 164 223 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo06g01565 324 Pfam WRKY DNA -binding domain 165 222 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo06g01565 324 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 86 310 - -
Cmo06g01565 324 MobiDBLite consensus disorder prediction 267 281 - -
Cmo06g01565 324 MobiDBLite consensus disorder prediction 86 153 - -
Cmo06g01565 324 MobiDBLite consensus disorder prediction 93 125 - -
Cmo06g01565 324 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 86 310 IPR044810 GO:0003700
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g01565 Cmo17g00367 CCT
Cmo06g01565 Cmo17g00367 ECH
Cmo06g01565 Cmo14g01612 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01565 Cmo-Chr6:11028323 Cmo19g01110 Cmo-Chr19:9444514 4.15E-45 dispersed
Cmo14g00962 Cmo-Chr14:5136664 Cmo06g01565 Cmo-Chr6:11028323 1.57E-45 dispersed
Cmo14g01612 Cmo-Chr14:12805350 Cmo06g01565 Cmo-Chr6:11028323 4.20E-115 wgd
Cmo17g00367 Cmo-Chr17:2255107 Cmo06g01565 Cmo-Chr6:11028323 1.32E-60 wgd
Cmo06g01565 Cmo-Chr6:11028323 Cmo08g01254 Cmo-Chr8:7916221 4.53E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10037 PF03106 WRKY 1.80E-25 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01565 - - bhj:120088001 350.517