Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01576 ATGGAAACTGGGGAGTCTGCTCCCCCTTCCCTTGGTCCTCGCTATGCACCGGACGACCCTACTCTTCCCAAACCTTGGAAGGGATTGATTGATGGGAGCACTGGACTGTTGTACTACTGGAACCCTGAAACCAACGTTACTCAGTATGAAAAACCAGTCTCTTTGCCACCACCATTACCACTCGCTCCTCATCCTAGTGCCTCTACTTCCAAGCCTACTTCAATCCCGGAGGGTCATTCAATGCCATCAAATGGCACACTAACCCCTCATGTACAGCAAAATCATCATGTCCCTCAACAGGAAGGCCAATCAAACAGCCAGCTTTCTCAACAACCTGGACATCTGATGTCACAACAGCACAGTTCTGTTGCAGGTCAGGCAATTGTTAATCACCATCCTAGCATGCAAATGGCACCAGATGGGCGACAACATAGCTTGCAACCGAACCAGGTTTTGCAGCAACAGGGGATGTTTCCGATGTCGTTGCAGCATATTGGCCAGCAGCAGGTCATGCATCAAGGTCAGAAAATGGCACATGCTAATCAACAAATATCTCAGCATCCTAACCAGCAACCCCTGCAGAATACAGGACAACAAATACCACAGCCCTCAATCCAGCATTTAGGACAGCCAAACATGCAAAATCAAACCCCATTAGTTGGCCAGCCTCAAGGTCCGCAATATGGTCAGCAGCATCCTCAGTATATGGGTTACCAGCAAAGCGTACATCCAAGTGTGCAGCAAAATTCCCAGCAGCAAGTTCAAAAGAGCCCTTTAGGGCAACCATTTGGTAATCACCTTGAGCAGAAGTCAGCTTTTCAGAAGAGAGAGGAGGATAATATCCAGTCAGGAAACCAAATTGGATTTTCTACCTCCCAGTTTCAACAAAGTGGTGGTACATCATCTATTCATAGTGTTCATCCTGGAACCAATTCTTCTCAAATGCAACAATACGGTTTACCTTCCGATCAAGCACGACAATTTGGTGGTTCTCCAGGAAACATGCAACAGCCGCATCCTGTGGTTCAATTGCAGCATTCAGGTACTGAATTGACTCATCGCCAACATCATTCTAGATTCCAAGATCCAATGGGCCCAGCTGCGATGCAGGAGAAGCAAGCTGGTTCTGAAAATTTGCCAGGCAGAGCTGGAAATGAATATTTCTTTGGCAGGAATGAGGGGCCTGGAATTGGTCCACATCAACCAAGGCTTGCAGCAATACCAATGGCAAGGAGCCAGCAGGATGCAAGGATGAGTGGTGTCCCATTTCCAAGTGCGGCACCCAGTCATCCCAGTGGAACAAGTTTTGCAGCCGGGCAATCACATAATATGTACAACCATGGGTCTGGTGGTCCATCATTGTCAAACAATGCTTTGATGGGTCCTCCCCATATTGGAGCTTCAGATGTTACTAATATGTCACCTGTTGAAGTTTATCGTCAACAGCATGAAGTAACTGCCACGGGTGATAATGTTCCAGCTCCATTCATGACATTTGAGGCTACTGGCTTCCCTCCGGAGATACTGAGAGAGATATATTCTGCTGGTTTCTCATCTCCCACGCCAATTCAAGCACAAACATGGCCGATTGCCCTGCAAGGTAGAGACATAGTCGCAATTGCTAAAACAGGGTCTGGGAAAACTTTGGGCTATTTGATTCCTGCTTTCGTTCTTCTAAGGCAGTGCCGAAATAACCCTCAAAATGGACCAACGGTGTTGGTTTTGGCTCCTACTAGGGAGCTTGCTACTCAAATACAAGATGAGGCGATTAAATTTGGGAGGGCTTCCAGGATTTGTTGTACGTGCTTGTATGGTGGTGCTCCGAAAGGTCCTCAGCTTAAAGAGTTAGATCGCGGGGCTGATATTGTTGTGGCAACTCCTGGCCGACTTAATGATATACTAGAAATGAAAATGATCAACTTTAGGCAAGTTTCACTTCTTGTGCTTGATGAAGCTGATCGGATGCTTGACATGGGATTTGAACCCCAAATTAGAAAGATTGTGAATGAAATACCACCACGCAGACAAACTCTTATGTATACAGCGACCTGGCCCAAGGAAGTAAGAAAAATAGCAAATGATCTTCTTGTCAATTCTGTCCAGGTGAATATTGGAAGCGTTGATGAACTTGCCGCTAACAAGGCTATCACACAGTATGTTGAATTCGTTCCACAGATGGAAAAACAGAGACGGTTGGAGCAGATCCTCAGGTCTCAGGAACGGGGGTCTAAGGTTATAATTTTTTGTTCCACAAAGAGATTGTGTGATCAGCTTGCACGGAATCTTGGGCGTGGGTTTGGGGCTGCTGCAATTCATGGAGACAAATCGCAAGGAGAGCGTGATTGGGTATTGAACCAGTTTCGCAGCGGAAAGTCCCCGATACTAGTTGCCACAGATGTTGCTGCCCGCGGGCTTGACATCAAAGATATAAGAGTGGTGATCAACTTTGATTTTCCAACTGGAATTGAGGACTATGTCCACCGAATTGGAAGAACTGGGAGGGCTGGAGCAACGGGAATGGCCTATACCTTCTTTTGTGAACAGGATTGGAAATATGCTGCTGATTTGATTAAAGTACTGGAGGGTGCGGATCAGCTTGTGCCTCCTGAGTTGCGAGATATGGCTATGCGTGGGGGGCCGAGTTTTGGTAAGGATAGGGGCGCTTTGGGTCGTTTCGATGCAGCTATGGGTGGCAGCCGCTGGGATTCTGGAGGCCGAGGTGGCATGAGAGATGGTGGGTTTGGTGGTCGTGGTGGTGCAAGGGATGGCGGGTTTGGTGGCCGCGGTGGAATGAGAGATGGCGGGTTTGGTGGCCGCGGTGGAATGAGAGATGGCGGGTTTGGTGGCCGTGGTGGAATGAGAGATGGTCTTGCTGGTGGACGAGGTGGGAGAGGTGATTTCTTCTCTGGACGAGGTAGAGGAGGACGGGCCTTTGGTGGCCCTCCTGGAGGTCATGTTGGTTGGGCCAGGGGTGATCGTGGTGGCCCACAGGATAGGTACAGTAGTGTGGATGGACGTGGGCGTGGACGTGGACAGGGTCGATTTGACAACAGAAGAGACTTCTCCAATAGGAGTAGAGGCAGAAGTTATAGTCGTAGCCCTGAAAGAGTTCGAACATGGGGCTACAGCCGAAGTCGCAGCCGCAGCCGCAGCCGCAGCGGTAGTCGTAGTAGTAGAAGTTGGAGTCGGAGTAGAAGTCGTAGCAGGAGCAGGAGTTGGTCACGTCGCTATAGCCGAAGCCGTAGCCGTAGCCATGATAATCACGAGCGATCACATGAGAAGAACTTCGATAGAAAAGACGACATACCTCCAGAATCAGTAACTGCTACTTCTCCGGGCACTCGAAAGAATGCTATCGAAATAAGAGAAGATGGGAGGCAGCTTCCTCCAGCAGACAGTAACAACATCAAACCGGGGAACCCAGAAAATGGTGCAGATACGAACGATCAAATTGTAAACGCCGCAGCTCAAGTAATATGA 3480 48.74 METGESAPPSLGPRYAPDDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPVSLPPPLPLAPHPSASTSKPTSIPEGHSMPSNGTLTPHVQQNHHVPQQEGQSNSQLSQQPGHLMSQQHSSVAGQAIVNHHPSMQMAPDGRQHSLQPNQVLQQQGMFPMSLQHIGQQQVMHQGQKMAHANQQISQHPNQQPLQNTGQQIPQPSIQHLGQPNMQNQTPLVGQPQGPQYGQQHPQYMGYQQSVHPSVQQNSQQQVQKSPLGQPFGNHLEQKSAFQKREEDNIQSGNQIGFSTSQFQQSGGTSSIHSVHPGTNSSQMQQYGLPSDQARQFGGSPGNMQQPHPVVQLQHSGTELTHRQHHSRFQDPMGPAAMQEKQAGSENLPGRAGNEYFFGRNEGPGIGPHQPRLAAIPMARSQQDARMSGVPFPSAAPSHPSGTSFAAGQSHNMYNHGSGGPSLSNNALMGPPHIGASDVTNMSPVEVYRQQHEVTATGDNVPAPFMTFEATGFPPEILREIYSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFVLLRQCRNNPQNGPTVLVLAPTRELATQIQDEAIKFGRASRICCTCLYGGAPKGPQLKELDRGADIVVATPGRLNDILEMKMINFRQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIANDLLVNSVQVNIGSVDELAANKAITQYVEFVPQMEKQRRLEQILRSQERGSKVIIFCSTKRLCDQLARNLGRGFGAAAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINFDFPTGIEDYVHRIGRTGRAGATGMAYTFFCEQDWKYAADLIKVLEGADQLVPPELRDMAMRGGPSFGKDRGALGRFDAAMGGSRWDSGGRGGMRDGGFGGRGGARDGGFGGRGGMRDGGFGGRGGMRDGGFGGRGGMRDGLAGGRGGRGDFFSGRGRGGRAFGGPPGGHVGWARGDRGGPQDRYSSVDGRGRGRGQGRFDNRRDFSNRSRGRSYSRSPERVRTWGYSRSRSRSRSRSGSRSSRSWSRSRSRSRSRSWSRRYSRSRSRSHDNHERSHEKNFDRKDDIPPESVTATSPGTRKNAIEIREDGRQLPPADSNNIKPGNPENGADTNDQIVNAAAQVI 1159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11088080 11094229 - CmoCh06G015760.1 Cmo06g01576 385138

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01576 1159 Pfam WW domain 22 52 IPR001202 GO:0005515
Cmo06g01576 1159 SMART ultradead3 516 719 IPR014001 -
Cmo06g01576 1159 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 528 702 IPR014001 -
Cmo06g01576 1159 MobiDBLite consensus disorder prediction 1133 1159 - -
Cmo06g01576 1159 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 294 968 - -
Cmo06g01576 1159 MobiDBLite consensus disorder prediction 1 28 - -
Cmo06g01576 1159 SMART helicmild6 752 836 IPR001650 -
Cmo06g01576 1159 Gene3D - 706 878 IPR027417 -
Cmo06g01576 1159 MobiDBLite consensus disorder prediction 51 122 - -
Cmo06g01576 1159 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 497 525 IPR014014 GO:0003724
Cmo06g01576 1159 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 568 853 IPR027417 -
Cmo06g01576 1159 Pfam Helicase conserved C-terminal domain 728 836 IPR001650 -
Cmo06g01576 1159 MobiDBLite consensus disorder prediction 900 1159 - -
Cmo06g01576 1159 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 294 968 - -
Cmo06g01576 1159 MobiDBLite consensus disorder prediction 997 1033 - -
Cmo06g01576 1159 SMART ww_5 21 54 IPR001202 GO:0005515
Cmo06g01576 1159 MobiDBLite consensus disorder prediction 289 332 - -
Cmo06g01576 1159 CDD SF2_C_DEAD 716 845 - -
Cmo06g01576 1159 MobiDBLite consensus disorder prediction 179 229 - -
Cmo06g01576 1159 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Cmo06g01576 1159 Gene3D - 16 54 - -
Cmo06g01576 1159 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 648 656 IPR000629 -
Cmo06g01576 1159 Gene3D - 471 705 IPR027417 -
Cmo06g01576 1159 MobiDBLite consensus disorder prediction 1062 1078 - -
Cmo06g01576 1159 SUPERFAMILY WW domain 17 53 IPR036020 GO:0005515
Cmo06g01576 1159 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Cmo06g01576 1159 MobiDBLite consensus disorder prediction 66 122 - -
Cmo06g01576 1159 MobiDBLite consensus disorder prediction 241 265 - -
Cmo06g01576 1159 MobiDBLite consensus disorder prediction 1079 1104 - -
Cmo06g01576 1159 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 731 875 IPR001650 -
Cmo06g01576 1159 Pfam DEAD/DEAH box helicase 521 691 IPR011545 GO:0003676|GO:0005524
Cmo06g01576 1159 CDD WW 23 51 IPR001202 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01576 K12823 DDX5, DBP2; ATP-dependent RNA helicase DDX5/DBP2 [EC:3.6.4.13] - csv:101206347 1548.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01576 Cmo-Chr6:11088080 Cmo14g00676 Cmo-Chr14:3444499 1.12E-18 dispersed
Cmo19g00224 Cmo-Chr19:1500574 Cmo06g01576 Cmo-Chr6:11088080 4.34E-103 dispersed
Cmo14g01604 Cmo-Chr14:12689868 Cmo06g01576 Cmo-Chr6:11088080 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g229 . . . . . Bpe14g01079 . . . . . . Car06g01343 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma02g00946 . . Cmo06g01576 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003909 1 2 1 1 1 1 2 1 2 1 2 2 2 1 2 2 1 2 2 2 1 2 1 1 2 1 1 2 2 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01576 Cmo_Chr06 FPKM 7.534606 10.092159 38.218082 38.807064 298.954193 340.217987 288.321991 41.778484 40.803356 42.272999