Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01585 ATGGAACAGAGAGGGAAATCGACTTCTGTGAACTCTACGATGTCATCTCGCGGCGGAAGGGTTTCTTCGAAGGCTATGGAGTCGCCGAAGCGGATGGTTTCTGTATCGGCCGTTCAATCGACGCCGCAGTCTGTTGTGAAGAAGCAAAGTTCGAGAGTTAGCAGATCTCTGACGCCGAATGCTCCAAAGAAGGGGAGAGATGGTGAGAATGTTGGAGTTTCGGCTCGAGTGGTCAACCGTGGTGGTCTCAAGCAAGATTCGCTGCGGCGTTGTTCGAATGTTGAGGATTGTAATGGAGTCAAGAGTGAATTGCAGAAGAAGCTTTGTTTCACAGAGGATTTGATTAAGGATTTGCAGTCTCAGTTAGTGGCGTTGAAGGAGGAGTTGCAGAAGTCTCAGAGCTTGAACCTGGAACTTCAATCGAAGAACGATTTGCTCGTCCGTGACCTAGCCGCCGCTGAAGCGAAGTGCGCTAATGCTAGCAACAACGACCAGTCGGTTGGCGAGTACAATCAGAAACTCGAAAATGGAAAGTTGCAGGCCCAACCATCAAATTCCTGTCGGAATGTTAAGGATTCGGAATCCAAGGCGGCTCCACCACCACCACCACCACCACGACGGGCGCCGCCGCCGCCGCCGCCGCCGCCGCCTCTTCCCGTGAAATCCTTGCCCCGACCAGTGGCCTCTCAGAAATCTCCAGACCTCGTACGCCTCTTTCACTCCTTAAAAAAGAAAGAAGGGAAGAGAGGTCCTCCATTGTTGGGGAAACCAGCTGCGATCAATGCCCACAATAGCATTGTTGGGGAAATTCAGAATCGTTCTGCGCATCTTTTAGCGATAAAAGCTGACATTGAAACCAAAGGAGAGTTCATCAATGGCCTCATCGACAAGGTTCTTGTTGCAGCTTATACAGACATAGAAGATGTCCTCAAATTTGTCGATTGGCTTGATTTCCAGCTCTCATCATTGGCCGATGAGCGGGCTGTGTTGAAACATTTCAAGTGGCCCGAGAAGAAAGCCGATGCCATGCGAGAAGCAGCCATAGAATACCGGGCGCTTAAACTGTTGGAAAATGAGATCTCTTTGTACAAGGATGACACTAATTCTCCATGTGAGGCAGCCCTGAAGAAGATGGCGAGCTTATTAGACAAGTCGGAGCGAGGCATACAACGCTTAATCGGGCTTCGAAATACCGTAATGCATTCTTATCAGGACCTAAAACTCCCAACAAATTGGATGCTAGACTCCGGTATCACGAGTAAGATAAAGCAAGCTTCTATGAATCTGGCGAAGATGTACATGAAAAGGGTGAAAACAGAGCTGAATTCGATTCGCAGTTCGGACAAAGAATCCAACCGGGAGTCGCTCCTACTCCAGGGAGTTCACTTCGTATACAGAACTCACCAGTTTGCTGGTGGGCTCGATTCAGAAACGCTGTGTGCTTTTGAGGAAATAAAGCAATGGGTCCCAAGACAAGTGGTGGGAGGGTCCCATTCGCAACAGGGATGGATAGTTGGCATACCATCATCGTAA 1533 49.32 MEQRGKSTSVNSTMSSRGGRVSSKAMESPKRMVSVSAVQSTPQSVVKKQSSRVSRSLTPNAPKKGRDGENVGVSARVVNRGGLKQDSLRRCSNVEDCNGVKSELQKKLCFTEDLIKDLQSQLVALKEELQKSQSLNLELQSKNDLLVRDLAAAEAKCANASNNDQSVGEYNQKLENGKLQAQPSNSCRNVKDSESKAAPPPPPPPRRAPPPPPPPPPLPVKSLPRPVASQKSPDLVRLFHSLKKKEGKRGPPLLGKPAAINAHNSIVGEIQNRSAHLLAIKADIETKGEFINGLIDKVLVAAYTDIEDVLKFVDWLDFQLSSLADERAVLKHFKWPEKKADAMREAAIEYRALKLLENEISLYKDDTNSPCEAALKKMASLLDKSERGIQRLIGLRNTVMHSYQDLKLPTNWMLDSGITSKIKQASMNLAKMYMKRVKTELNSIRSSDKESNRESLLLQGVHFVYRTHQFAGGLDSETLCAFEEIKQWVPRQVVGGSHSQQGWIVGIPSS 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11126084 11130564 - CmoCh06G015850.1 Cmo06g01585 385147

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01585 510 PANTHER F11A17.16 7 495 - -
Cmo06g01585 510 Coils Coil 115 163 - -
Cmo06g01585 510 SUPERFAMILY Formin homology 2 domain (FH2 domain) 200 383 - -
Cmo06g01585 510 MobiDBLite consensus disorder prediction 33 58 - -
Cmo06g01585 510 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 7 495 IPR040265 -
Cmo06g01585 510 MobiDBLite consensus disorder prediction 175 192 - -
Cmo06g01585 510 MobiDBLite consensus disorder prediction 1 75 - -
Cmo06g01585 510 MobiDBLite consensus disorder prediction 1 22 - -
Cmo06g01585 510 MobiDBLite consensus disorder prediction 196 223 - -
Cmo06g01585 510 MobiDBLite consensus disorder prediction 175 228 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01585 - - - csv:101205525 788.875
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01585 Cmo-Chr6:11126084 Cmo07g00189 Cmo-Chr7:969192 1.86E-80 dispersed
Cmo06g01585 Cmo-Chr6:11126084 Cmo03g01469 Cmo-Chr3:10551195 1.05E-85 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g269 . . . . . . . . . . . . Car06g01351 . Sed12g0731 Cpe08g00129 . Bhi01g01139 Tan10g1128 Cmetu06g1150 . Hepe05g1340 . Lcy11g1300 . . . . . . . . . . . . . . Cme06g00837 . Blo07g00125 . . . . . . . Cmo06g01585 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013373 0 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01585 Cmo_Chr06 FPKM 19.5138 17.227884 13.784292 12.09552 27.141573 18.837719 23.558273 9.590201 8.862482 8.781693