Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01587 ATGAGAGTTGGGAAGTATGAGTTGGGGAAAACTCTGGGAGAAGGAAATTTCGGCAAGGTAAAGTTGGCCGTCGATCTCCGTTCCGGCCGCCGTTATGCTGTCAAGATCCTTGACAAGACCAAGATTCTTCATCTCAACTTCTCCGATCAGATTAAGCGTGAAATAAGTACTCTCAAGCTTCTCAGACATCCGAATGTTGTTAGACTCTATGAGGTTTTAGCTAGTAAGACGAAGATTTATATGGTTATGGAGTGCGTCACTGGTGGGGAATTGTTTGATAGAATCGAATCAAAAGGTAAGTTGGATGAAGCTGAAGGACGACGACTCTTCCAGCAGCTTTTTGATGGTCTAAGCTACTGCCATGATAAAGGAGTTTACCACAGAGATCTCAAGCTGGAAAACGTGCTTGTTGATGATAAGGGAAACATTAAGATTTCTGATTTTGGCCTCAGTGCTTTACCGCAGAATTGCAGGGAAGATGGTTTGCTGCACACCACCTGTGGAAGTCCCAACTATGTTGCACCAGAAGTACTTGCTAATAGAGGATACAATGGAGCTGCCTCTGATATATGGTCATGTGGGGTTATCTTGTATGTGATTCTTACAGCTTGTCTTCCATTTGACGAGACGAATCTGGCTCTACTTTATAAAAAGACTTTGAGGGGGGATTTTCAGCTACCCAAATGGTTATCAGCAGGTGCCAGAAATTTGATAAAGAGAACTCTTGACCCCAATCCCAATACTCGGATTACAATGGCAGGAATTAAAAAGGATGAATGGTTCAAGATTGACTATAATCCTGCTTCTCCTTGTTATGATGATGATGAGGATGAGGATATTCCATTCACTGATCAGGACGATGCCATCTCGGCGCACGATGAGGCATTTGACGGTGAAAACAGCCCAGAATCTCCCTCTATTATCAACGCGTTTGAGTTAATTGGGATGTCTTCAAGTCTGGACCTGTCCGGCTTCTTTGAGCAAGAGGATGTTTCTGAGAGGAAGACCAGATTTACATCCAACCATTCTGCCAAGGACTTGCTCGAGAGGATCGAGATTATAGCAACGGATATGGGATTCCGGGTCCAAAAGAAAAGTGGAAAGTTGAAAGTAATGCAAGAGATAAGAAATCAAAGAAGCCTAAGCAATCTCTCATTCAAAGCAGAGGTCTTTGAGATTAGCCCATTGCTTAACGTAGTGGAACTGAAGAAATCCTTTGGAGATTCCTCAGCTTACAGACAGTTGTGTGAAAGGCTATCAAATGATTTGGGCACAAACCCCGAGCTCGAACGGCATAATTCGAGTTCATTCACGTTAAATAGTACATGTTAG 1332 43.09 MRVGKYELGKTLGEGNFGKVKLAVDLRSGRRYAVKILDKTKILHLNFSDQIKREISTLKLLRHPNVVRLYEVLASKTKIYMVMECVTGGELFDRIESKGKLDEAEGRRLFQQLFDGLSYCHDKGVYHRDLKLENVLVDDKGNIKISDFGLSALPQNCREDGLLHTTCGSPNYVAPEVLANRGYNGAASDIWSCGVILYVILTACLPFDETNLALLYKKTLRGDFQLPKWLSAGARNLIKRTLDPNPNTRITMAGIKKDEWFKIDYNPASPCYDDDEDEDIPFTDQDDAISAHDEAFDGENSPESPSIINAFELIGMSSSLDLSGFFEQEDVSERKTRFTSNHSAKDLLERIEIIATDMGFRVQKKSGKLKVMQEIRNQRSLSNLSFKAEVFEISPLLNVVELKKSFGDSSAYRQLCERLSNDLGTNPELERHNSSSFTLNSTC 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11133172 11136594 + CmoCh06G015870.1 Cmo06g01587 385149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01587 443 PANTHER CBL-INTERACTING PROTEIN KINASE 21 1 429 - -
Cmo06g01587 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Cmo06g01587 443 ProSiteProfiles Protein kinase domain profile. 6 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g01587 443 Pfam NAF domain 305 364 IPR004041 GO:0007165
Cmo06g01587 443 SMART serkin_6 6 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g01587 443 PANTHER - 1 429 - -
Cmo06g01587 443 ProSitePatterns Protein kinases ATP-binding region signature. 12 35 IPR017441 GO:0005524
Cmo06g01587 443 Gene3D Transferase(Phosphotransferase) domain 1 2 306 - -
Cmo06g01587 443 Pfam Protein kinase domain 6 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g01587 443 ProSiteProfiles NAF domain profile. 303 327 IPR018451 GO:0007165
Cmo06g01587 443 MobiDBLite consensus disorder prediction 423 443 - -
Cmo06g01587 443 CDD CIPK_C 309 420 - -
Cmo06g01587 443 SUPERFAMILY Protein kinase-like (PK-like) 3 262 IPR011009 -
Cmo06g01587 443 Gene3D Kinase associated domain 1, KA1 307 425 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01587 Cmo-Chr6:11133172 Cmo13g00546 Cmo-Chr13:6316667 5.96E-153 dispersed
Cmo14g01590 Cmo-Chr14:12623954 Cmo06g01587 Cmo-Chr6:11133172 0 wgd
Cmo17g00389 Cmo-Chr17:2420324 Cmo06g01587 Cmo-Chr6:11133172 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74438 PF00069 Pkinase 1.60E-72 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01587 K07198 - csv:101205987 794.653