Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo06g01587 | ATGAGAGTTGGGAAGTATGAGTTGGGGAAAACTCTGGGAGAAGGAAATTTCGGCAAGGTAAAGTTGGCCGTCGATCTCCGTTCCGGCCGCCGTTATGCTGTCAAGATCCTTGACAAGACCAAGATTCTTCATCTCAACTTCTCCGATCAGATTAAGCGTGAAATAAGTACTCTCAAGCTTCTCAGACATCCGAATGTTGTTAGACTCTATGAGGTTTTAGCTAGTAAGACGAAGATTTATATGGTTATGGAGTGCGTCACTGGTGGGGAATTGTTTGATAGAATCGAATCAAAAGGTAAGTTGGATGAAGCTGAAGGACGACGACTCTTCCAGCAGCTTTTTGATGGTCTAAGCTACTGCCATGATAAAGGAGTTTACCACAGAGATCTCAAGCTGGAAAACGTGCTTGTTGATGATAAGGGAAACATTAAGATTTCTGATTTTGGCCTCAGTGCTTTACCGCAGAATTGCAGGGAAGATGGTTTGCTGCACACCACCTGTGGAAGTCCCAACTATGTTGCACCAGAAGTACTTGCTAATAGAGGATACAATGGAGCTGCCTCTGATATATGGTCATGTGGGGTTATCTTGTATGTGATTCTTACAGCTTGTCTTCCATTTGACGAGACGAATCTGGCTCTACTTTATAAAAAGACTTTGAGGGGGGATTTTCAGCTACCCAAATGGTTATCAGCAGGTGCCAGAAATTTGATAAAGAGAACTCTTGACCCCAATCCCAATACTCGGATTACAATGGCAGGAATTAAAAAGGATGAATGGTTCAAGATTGACTATAATCCTGCTTCTCCTTGTTATGATGATGATGAGGATGAGGATATTCCATTCACTGATCAGGACGATGCCATCTCGGCGCACGATGAGGCATTTGACGGTGAAAACAGCCCAGAATCTCCCTCTATTATCAACGCGTTTGAGTTAATTGGGATGTCTTCAAGTCTGGACCTGTCCGGCTTCTTTGAGCAAGAGGATGTTTCTGAGAGGAAGACCAGATTTACATCCAACCATTCTGCCAAGGACTTGCTCGAGAGGATCGAGATTATAGCAACGGATATGGGATTCCGGGTCCAAAAGAAAAGTGGAAAGTTGAAAGTAATGCAAGAGATAAGAAATCAAAGAAGCCTAAGCAATCTCTCATTCAAAGCAGAGGTCTTTGAGATTAGCCCATTGCTTAACGTAGTGGAACTGAAGAAATCCTTTGGAGATTCCTCAGCTTACAGACAGTTGTGTGAAAGGCTATCAAATGATTTGGGCACAAACCCCGAGCTCGAACGGCATAATTCGAGTTCATTCACGTTAAATAGTACATGTTAG | 1332 | 43.09 | MRVGKYELGKTLGEGNFGKVKLAVDLRSGRRYAVKILDKTKILHLNFSDQIKREISTLKLLRHPNVVRLYEVLASKTKIYMVMECVTGGELFDRIESKGKLDEAEGRRLFQQLFDGLSYCHDKGVYHRDLKLENVLVDDKGNIKISDFGLSALPQNCREDGLLHTTCGSPNYVAPEVLANRGYNGAASDIWSCGVILYVILTACLPFDETNLALLYKKTLRGDFQLPKWLSAGARNLIKRTLDPNPNTRITMAGIKKDEWFKIDYNPASPCYDDDEDEDIPFTDQDDAISAHDEAFDGENSPESPSIINAFELIGMSSSLDLSGFFEQEDVSERKTRFTSNHSAKDLLERIEIIATDMGFRVQKKSGKLKVMQEIRNQRSLSNLSFKAEVFEISPLLNVVELKKSFGDSSAYRQLCERLSNDLGTNPELERHNSSSFTLNSTC | 443 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 11133172 | 11136594 | + | CmoCh06G015870.1 | Cmo06g01587 | 385149 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo06g01587 | 443 | PANTHER | CBL-INTERACTING PROTEIN KINASE 21 | 1 | 429 | - | - | |
Cmo06g01587 | 443 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 125 | 137 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo06g01587 | 443 | ProSiteProfiles | Protein kinase domain profile. | 6 | 261 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo06g01587 | 443 | Pfam | NAF domain | 305 | 364 | IPR004041 | GO:0007165 | |
Cmo06g01587 | 443 | SMART | serkin_6 | 6 | 261 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo06g01587 | 443 | PANTHER | - | 1 | 429 | - | - | |
Cmo06g01587 | 443 | ProSitePatterns | Protein kinases ATP-binding region signature. | 12 | 35 | IPR017441 | GO:0005524 | |
Cmo06g01587 | 443 | Gene3D | Transferase(Phosphotransferase) domain 1 | 2 | 306 | - | - | |
Cmo06g01587 | 443 | Pfam | Protein kinase domain | 6 | 261 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo06g01587 | 443 | ProSiteProfiles | NAF domain profile. | 303 | 327 | IPR018451 | GO:0007165 | |
Cmo06g01587 | 443 | MobiDBLite | consensus disorder prediction | 423 | 443 | - | - | |
Cmo06g01587 | 443 | CDD | CIPK_C | 309 | 420 | - | - | |
Cmo06g01587 | 443 | SUPERFAMILY | Protein kinase-like (PK-like) | 3 | 262 | IPR011009 | - | |
Cmo06g01587 | 443 | Gene3D | Kinase associated domain 1, KA1 | 307 | 425 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo06g01587 | Cmo-Chr6:11133172 | Cmo13g00546 | Cmo-Chr13:6316667 | 5.96E-153 | dispersed | |
Cmo14g01590 | Cmo-Chr14:12623954 | Cmo06g01587 | Cmo-Chr6:11133172 | 0 | wgd | |
Cmo17g00389 | Cmo-Chr17:2420324 | Cmo06g01587 | Cmo-Chr6:11133172 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74438 | PF00069 | Pkinase | 1.60E-72 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo06g01587 | K07198 | - | csv:101205987 | 794.653 |