Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01603 ATGGAGAAGGAGTTCTTCATGAACGATGGAAGCAGTTTTTATGGGATGGATTCGAGTGTGTTGTTCAATTCCAATTGGGAAAATTCGATGGATCAGAGCGATCTCTTTGAGTCTACTTTGAGTTCGATTGTGTCTTCTCCGGCGAATTCACACGCTGGGGCTGTAATCGGCGGTGGTAGTGGCGGCGGCGACAACTTGATGATGCGAGAATTGATCGGAAGGCTTGGAAGTATTTGTAGTTCTGGTGAGATTTCGCCTCATTCTTACATTGGTGGGACGAACAATAATAGTACCAATACTTCTTGTTACAATACGCCTTTGAATTCCCCTCCGATGAAGGGAAATTTATCTGTCGGTCACCATCAAAATCTAGCTCCATTTTCGGCTGATCCAGGTTTAGCTGAAAGGGTTGCGAGATTTTCTTGCTTTGGGAACAAGAATCTTGCAGTGAATGGGCAATTGTGTTCTAATGAAACTCAAGAATTGAGCAACAAGTCAATGGCTGGAGCTGGTGTGGAATCTGGCAAGCTTTCTAGGGTTTCAAGTAACAAATCCTTCAATGTTAGTGGAATTGGATCTCAAATGGGAGTTCAGAAGGGAAATTCTATGGCTAACAAGAAAGTTATGAACAGGTTTTCGAGGTCTTCGACCCCCGAAAATGACGATTCGCGGGAGGGATCGTCGGTTTCGGAGCAGATTACAGCTGGGGAATTAGGATTCAAAGTTAACACTAGGAAAAGGAAATCAGCTCATACTGGTGAAGCAAAGAATGTGAAGGCTGCAGGGGAGAATCATGAACCAAATGGCAAGAAAATCAAACCAGAGATGGATGCTGCAAAGGGGAAGGCTGAGGCAAAAGATGCAACTCAGAAACAAAACAATGATAATTCAAAGCCTCCAGAGCCTCCAAAGGATTATATCCATGTTAGAGCTAAAAGGGGTCAAGCTACAGATAGCCATAGTTTAGCTGAAAGAGTGAGAGCCAAAGCACTCATTATCCGACGAGAGAAAATCAGCAAACGGATGAAGTTTCTTCAAGATCTCGTCCCCGGTTGCAATAAGATAACTGGGAAGGCAGTGATGCTTGATGAAATTATAAACTATGTTCAATCTTTGCAGCACCAAGTTGAGTTTCTTTCAATGAAATTGGCTACTGTCAATCCAAGGATGGATTTTAACATGGAAACTCTTTTGCCAAAGGATATCTTCAAAGGTTCGAGTTCGTTACCGCATACGATTTACCCTATTGATTCGTCTGTGCCCACTTTTGCATATGAGTATCAATCTATGAACATTCCTCCTCTTCATAGTGATCAAACGCAGGGTGGATACCACAAAATGGGGAATGGAATCCAAATTTCCAAGTTTTGGGAGGATGAACTCCACAGTGTAGTTCAGATGGGTTATGTACAAACCCAGCTGCAGAATCCTCATGGTGAGATGAAAAGTGAATTGTAA 1458 42.73 MEKEFFMNDGSSFYGMDSSVLFNSNWENSMDQSDLFESTLSSIVSSPANSHAGAVIGGGSGGGDNLMMRELIGRLGSICSSGEISPHSYIGGTNNNSTNTSCYNTPLNSPPMKGNLSVGHHQNLAPFSADPGLAERVARFSCFGNKNLAVNGQLCSNETQELSNKSMAGAGVESGKLSRVSSNKSFNVSGIGSQMGVQKGNSMANKKVMNRFSRSSTPENDDSREGSSVSEQITAGELGFKVNTRKRKSAHTGEAKNVKAAGENHEPNGKKIKPEMDAAKGKAEAKDATQKQNNDNSKPPEPPKDYIHVRAKRGQATDSHSLAERVRAKALIIRREKISKRMKFLQDLVPGCNKITGKAVMLDEIINYVQSLQHQVEFLSMKLATVNPRMDFNMETLLPKDIFKGSSSLPHTIYPIDSSVPTFAYEYQSMNIPPLHSDQTQGGYHKMGNGIQISKFWEDELHSVVQMGYVQTQLQNPHGEMKSEL 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11225025 11227751 - CmoCh06G016030.1 Cmo06g01603 385165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01603 485 CDD bHLH_AtBPE_like 305 397 - -
Cmo06g01603 485 SMART finulus 325 378 IPR011598 GO:0046983
Cmo06g01603 485 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 313 392 IPR036638 GO:0046983
Cmo06g01603 485 MobiDBLite consensus disorder prediction 210 306 - -
Cmo06g01603 485 PANTHER BHLH TRANSCRIPTION FACTOR 21 428 - -
Cmo06g01603 485 MobiDBLite consensus disorder prediction 241 291 - -
Cmo06g01603 485 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 322 372 IPR011598 GO:0046983
Cmo06g01603 485 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 21 428 IPR024097 GO:0006355
Cmo06g01603 485 Gene3D - 312 393 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01603 Cmo-Chr6:11225025 Cmo08g00241 Cmo-Chr8:1463780 1.37E-79 dispersed
Cmo14g01559 Cmo-Chr14:12449597 Cmo06g01603 Cmo-Chr6:11225025 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01603 - - cmax:111470804 887.1