Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo06g01610 | ATGGAGAAGGACAAACCCCAAAGCCATTCTGGTGGATTTCTTCCCCCATCGAGTCGCTACTCGAGTCTTTCACCAACTGCAAGTAGTTTCAATGGAAAATCCGAGACTGCTTCGTGTTCAATGTCGCTTCCTCCAATGGCTCCGAGTCCTAATTCTTCCGATTCGGGTCAATTTGGTCGTGGAATGTCCAGTGATTCCAATCGGTTCAGCCATGATATTAGTCGGATGCCTGATAACCCGCCGAGAAATATGGGTCATCGACGTGCCCATTCCGAGATTCTGACTCTTCCTGATGATATTTGTTTTGACAGTGACCTTGGTGTCATCGGTGGTGCTGATGGGCCTTCCTTTTCTGATGATACTGAGGAAGATTTGTTGTCCATGTACCTTGACATGGATAAATTCAATTCTTCCTCTGCTACCTCTGCAATGCAAGTTGGGGAGTCATCTTCCGCTGCTGTAGAAGCAAGATCAACTCCTACTTCAGGAATTGGAGCTACAACTTCTAAGGATGATGCTGCTGTTGGTTTGAAGGAGAGGCCAAGAGTTAGGCACCAGCACAGCCAGTCCATGGATGGCTTGTCAACCATAAAGCCTGAGATGCTTGTCTCAGGGTCTGAAGAAGTTTCTGCCGCTGATTCCAAGAAAGCTATGTCAGCTACAAAGCTTGCTGAGCTTGCGCTAATTGACCCCAAACGTGCAAAGAGGATATGGGCAAATAGACAGTCAGCTGCTAGGTCAAAGGAAAGAAAGATGCGGTACATTGCTGAGCTTGAACGGAAAGTTCAGACTCTGCAAACAGAGGCAACCTCATTATCTGCTCAATTAACCCTCTTACAGGTGGTTATCACAAAATTAATCGTGTTTATCAGAGACACAAACGGTCTTACTGCTGAGAACAGTGAGCTTAAGCTGAGGTTGCAGACAATGGAGCAGCAGGTTCACCTGCAAGATGCTCTAAATGAAGCATTGAAAGAGGAAATTCAACATTTGAAAATATTGACTGGCCAAGCAATCCCAAATGGTGGATCAATGTCAAATTTTGCATCCTTTGGAGCCAGCCAACCATTTTACCCAAACAATCAAGCAATGCACACTTTGTTAACTGCTCAGCAATTTCAGCAACTACAAATCCACTCGCAGCAGCAGCAGCAACAACAACAGCAACATTTTCAGTACCATCAGCTGCATCAGCTTCAGCAGCAACCAACGGGGGACATCAAAATGAAAGGACCGACTTCTTCTCCGAGTTCGAAAGACAACACATCAGATACGTCCTCTCCCTCTTGTTGA | 1293 | 45.78 | MEKDKPQSHSGGFLPPSSRYSSLSPTASSFNGKSETASCSMSLPPMAPSPNSSDSGQFGRGMSSDSNRFSHDISRMPDNPPRNMGHRRAHSEILTLPDDICFDSDLGVIGGADGPSFSDDTEEDLLSMYLDMDKFNSSSATSAMQVGESSSAAVEARSTPTSGIGATTSKDDAAVGLKERPRVRHQHSQSMDGLSTIKPEMLVSGSEEVSAADSKKAMSATKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQVVITKLIVFIRDTNGLTAENSELKLRLQTMEQQVHLQDALNEALKEEIQHLKILTGQAIPNGGSMSNFASFGASQPFYPNNQAMHTLLTAQQFQQLQIHSQQQQQQQQQHFQYHQLHQLQQQPTGDIKMKGPTSSPSSKDNTSDTSSPSC | 430 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 11262263 | 11266363 | - | CmoCh06G016100.1 | Cmo06g01610 | 385172 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo06g01610 | 430 | Coils | Coil | 293 | 327 | - | - | |
Cmo06g01610 | 430 | Pfam | bZIP transcription factor | 232 | 283 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo06g01610 | 430 | MobiDBLite | consensus disorder prediction | 402 | 430 | - | - | |
Cmo06g01610 | 430 | CDD | bZIP_plant_RF2 | 233 | 280 | IPR044759 | GO:0003700|GO:0006355 | |
Cmo06g01610 | 430 | SUPERFAMILY | Leucine zipper domain | 232 | 287 | IPR046347 | GO:0003700|GO:0006355 | |
Cmo06g01610 | 430 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 230 | 280 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo06g01610 | 430 | SMART | brlzneu | 228 | 292 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo06g01610 | 430 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 7 | 424 | - | - | |
Cmo06g01610 | 430 | MobiDBLite | consensus disorder prediction | 1 | 86 | - | - | |
Cmo06g01610 | 430 | Gene3D | - | 231 | 285 | - | - | |
Cmo06g01610 | 430 | MobiDBLite | consensus disorder prediction | 11 | 70 | - | - | |
Cmo06g01610 | 430 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 7 | 424 | - | - | |
Cmo06g01610 | 430 | Coils | Coil | 248 | 275 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo06g01610 | Cmo-Chr6:11262263 | Cmo20g00333 | Cmo-Chr20:1631748 | 4.78E-51 | dispersed | |
Cmo14g01553 | Cmo-Chr14:12395349 | Cmo06g01610 | Cmo-Chr6:11262263 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10040 | PF00170 | bZIP_1 | 6.30E-10 | CL0018 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo06g01610 | - | - | cmax:111470876 | 734.947 |