Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01610 ATGGAGAAGGACAAACCCCAAAGCCATTCTGGTGGATTTCTTCCCCCATCGAGTCGCTACTCGAGTCTTTCACCAACTGCAAGTAGTTTCAATGGAAAATCCGAGACTGCTTCGTGTTCAATGTCGCTTCCTCCAATGGCTCCGAGTCCTAATTCTTCCGATTCGGGTCAATTTGGTCGTGGAATGTCCAGTGATTCCAATCGGTTCAGCCATGATATTAGTCGGATGCCTGATAACCCGCCGAGAAATATGGGTCATCGACGTGCCCATTCCGAGATTCTGACTCTTCCTGATGATATTTGTTTTGACAGTGACCTTGGTGTCATCGGTGGTGCTGATGGGCCTTCCTTTTCTGATGATACTGAGGAAGATTTGTTGTCCATGTACCTTGACATGGATAAATTCAATTCTTCCTCTGCTACCTCTGCAATGCAAGTTGGGGAGTCATCTTCCGCTGCTGTAGAAGCAAGATCAACTCCTACTTCAGGAATTGGAGCTACAACTTCTAAGGATGATGCTGCTGTTGGTTTGAAGGAGAGGCCAAGAGTTAGGCACCAGCACAGCCAGTCCATGGATGGCTTGTCAACCATAAAGCCTGAGATGCTTGTCTCAGGGTCTGAAGAAGTTTCTGCCGCTGATTCCAAGAAAGCTATGTCAGCTACAAAGCTTGCTGAGCTTGCGCTAATTGACCCCAAACGTGCAAAGAGGATATGGGCAAATAGACAGTCAGCTGCTAGGTCAAAGGAAAGAAAGATGCGGTACATTGCTGAGCTTGAACGGAAAGTTCAGACTCTGCAAACAGAGGCAACCTCATTATCTGCTCAATTAACCCTCTTACAGGTGGTTATCACAAAATTAATCGTGTTTATCAGAGACACAAACGGTCTTACTGCTGAGAACAGTGAGCTTAAGCTGAGGTTGCAGACAATGGAGCAGCAGGTTCACCTGCAAGATGCTCTAAATGAAGCATTGAAAGAGGAAATTCAACATTTGAAAATATTGACTGGCCAAGCAATCCCAAATGGTGGATCAATGTCAAATTTTGCATCCTTTGGAGCCAGCCAACCATTTTACCCAAACAATCAAGCAATGCACACTTTGTTAACTGCTCAGCAATTTCAGCAACTACAAATCCACTCGCAGCAGCAGCAGCAACAACAACAGCAACATTTTCAGTACCATCAGCTGCATCAGCTTCAGCAGCAACCAACGGGGGACATCAAAATGAAAGGACCGACTTCTTCTCCGAGTTCGAAAGACAACACATCAGATACGTCCTCTCCCTCTTGTTGA 1293 45.78 MEKDKPQSHSGGFLPPSSRYSSLSPTASSFNGKSETASCSMSLPPMAPSPNSSDSGQFGRGMSSDSNRFSHDISRMPDNPPRNMGHRRAHSEILTLPDDICFDSDLGVIGGADGPSFSDDTEEDLLSMYLDMDKFNSSSATSAMQVGESSSAAVEARSTPTSGIGATTSKDDAAVGLKERPRVRHQHSQSMDGLSTIKPEMLVSGSEEVSAADSKKAMSATKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQVVITKLIVFIRDTNGLTAENSELKLRLQTMEQQVHLQDALNEALKEEIQHLKILTGQAIPNGGSMSNFASFGASQPFYPNNQAMHTLLTAQQFQQLQIHSQQQQQQQQQHFQYHQLHQLQQQPTGDIKMKGPTSSPSSKDNTSDTSSPSC 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11262263 11266363 - CmoCh06G016100.1 Cmo06g01610 385172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01610 430 Coils Coil 293 327 - -
Cmo06g01610 430 Pfam bZIP transcription factor 232 283 IPR004827 GO:0003700|GO:0006355
Cmo06g01610 430 MobiDBLite consensus disorder prediction 402 430 - -
Cmo06g01610 430 CDD bZIP_plant_RF2 233 280 IPR044759 GO:0003700|GO:0006355
Cmo06g01610 430 SUPERFAMILY Leucine zipper domain 232 287 IPR046347 GO:0003700|GO:0006355
Cmo06g01610 430 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 230 280 IPR004827 GO:0003700|GO:0006355
Cmo06g01610 430 SMART brlzneu 228 292 IPR004827 GO:0003700|GO:0006355
Cmo06g01610 430 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 7 424 - -
Cmo06g01610 430 MobiDBLite consensus disorder prediction 1 86 - -
Cmo06g01610 430 Gene3D - 231 285 - -
Cmo06g01610 430 MobiDBLite consensus disorder prediction 11 70 - -
Cmo06g01610 430 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 7 424 - -
Cmo06g01610 430 Coils Coil 248 275 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01610 Cmo-Chr6:11262263 Cmo20g00333 Cmo-Chr20:1631748 4.78E-51 dispersed
Cmo14g01553 Cmo-Chr14:12395349 Cmo06g01610 Cmo-Chr6:11262263 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10040 PF00170 bZIP_1 6.30E-10 CL0018 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01610 - - cmax:111470876 734.947