Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01612 ATGGAGGTCGACGATCGCTTTGTGGAATTGAATACCAGGACCTGTGTGGTGTTGGGCGGTCGTGGATTTCTCGGCCGATCTCTCGTTCTCCGCCTCTTGAAACTCGCTAAGTGGAATGTTCGTATCGCTGATTCTGCTGAATCGCTTGAACTCGATCCCTCTGAGCAGGATTCTCTCCTCTCTGACGCGCTTGTCGCTGGCCGGGCTTCGTATTTCCATGTCGATGTTCGCAATAAGGATCAGATCGTTGCAGGTACCAGCTACTTGTATGACAGAATGATTTTTTTTCCTTTTGCAGCTCTCAGTGGTTCTTCTGTTGTGTTTTATATGGACTATGAAGATTCACATTCAAATGATATTTATCTCTCATACATGTTTATAGTTCAAGGTATAGAAAGCCGTGCCAAAAATGTCATTAATGCTTGTCGAGACTGCAAAGTAAGACGGCTAATATTCAACAGTTCAGCTGATGTAATTTTTGATGGTTCACGTGATATACAAAATGGAGAGGAACCATTGGCATACCCACGGAAATTTGAGGACATGTTGAGTGACCTAAAGGCTCAAGCTGAAGCACTCATCCTGTTTGCCAACGATATAGATGGACTTCTAACATGTGCACTTCGCCCAAGCAATGTTTTTGGGCCGGAAGACACACGACTAGTTCCTTTTGTGGTGAATCAGGCAAAATCTGGTTTGGCTAAGTTCATTATAGGGAATGGCGAAAACCTGTCTGACTTCACATTTGTTGAGAATGTGACCCATGCCCATATCTGTGCAGAGGAAGCACTAGATTTTCGAATGGTGTCTGTGGCTGGAAAGGCATTTTTCATCACCAATTTTAAGCCCATGAAGTTTTGGGAATTTATCTCTCTCATTTTGGGAGGCTTGGGTTACCGAAGGTACAGAATTACAGTCCATGAACTTTTAGACTTTGTTGTTCTGCCATCCGTAAAACTTCCCTTTAAGATGGTTTGGAATGTTCTCTTGTTTTTGAAATGGATACATGAAAAGTTTGGATTCAGTAGATATAATCATTCCACTTGGGCTCGTTACATTCAGCTAGCCACGTGCACTAGAACCTTTAACTGTGTTGCTGCACATAAACAACTTGGGTACTCTCCTATAGTCTCCATGGAAGAAGGCATCACACTAACCATTGAATCATTTTCACATTTGCGCAAAGAATTATCTCTTGCAAGTCTCACTGAATTTACCGAAGAATCAAAAGCCGATAAGCTGCTGGGTGGTGGAAGAGGTTCAAACTTTTTCTCATTTAATATGATTGTATTTTTTGTATTTTATATGCTACTACACGGATATTTGGCCTTTGCCGATATATTGTTATGGCGAGAAGAGAAGAAGTCATTCACGTGTTTTCTTGCTTCGTTTCTATTGTTTTATTGGTTTTTTCTACGTGGAGGAACTTTTATATCATCGGTAGCTCAGCTTCTGTTGTGTATCGTTGTCGTCCTTTATGGATATGGCTTCATACCAACAAACATATATGGGTTTCCTGTCCAGAAATTATCTGCGACTATGTTTGGACCATCTGATACAGTAGTCAGAGATTCAATCATGGGCATAGCATGCTTGTGGAATAGAGGTGTACATAACGCAAGATCATTGGCCCGAGGAGAGGATTGGAATTATTTTTTTAAGATACATGAATTTTCAAATACTGCCGTAACATTTCTTTACGTCCTCAAGCTGTTTCTCTCACGATCCTTGACTTTGCTGATAGGCATGGGACTGGTGTTTGCATTCACTGCATTCTTTGTGTATGAGCAATACGAAATCGAGATTGATGGATTTGCTAAGTTCCTTTTCATCAGCATCATGGAATTAAAGAGTGTACTTGCAAGTCATTTACCACCTCCATTGATGTCATCTCTCTGGTGTAACAAATTATCACATCAACCTAACGAAGTTGCAATGTCAAAGCGTTAG 1950 40.97 MEVDDRFVELNTRTCVVLGGRGFLGRSLVLRLLKLAKWNVRIADSAESLELDPSEQDSLLSDALVAGRASYFHVDVRNKDQIVAGTSYLYDRMIFFPFAALSGSSVVFYMDYEDSHSNDIYLSYMFIVQGIESRAKNVINACRDCKVRRLIFNSSADVIFDGSRDIQNGEEPLAYPRKFEDMLSDLKAQAEALILFANDIDGLLTCALRPSNVFGPEDTRLVPFVVNQAKSGLAKFIIGNGENLSDFTFVENVTHAHICAEEALDFRMVSVAGKAFFITNFKPMKFWEFISLILGGLGYRRYRITVHELLDFVVLPSVKLPFKMVWNVLLFLKWIHEKFGFSRYNHSTWARYIQLATCTRTFNCVAAHKQLGYSPIVSMEEGITLTIESFSHLRKELSLASLTEFTEESKADKLLGGGRGSNFFSFNMIVFFVFYMLLHGYLAFADILLWREEKKSFTCFLASFLLFYWFFLRGGTFISSVAQLLLCIVVVLYGYGFIPTNIYGFPVQKLSATMFGPSDTVVRDSIMGIACLWNRGVHNARSLARGEDWNYFFKIHEFSNTAVTFLYVLKLFLSRSLTLLIGMGLVFAFTAFFVYEQYEIEIDGFAKFLFISIMELKSVLASHLPPPLMSSLWCNKLSHQPNEVAMSKR 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11267763 11275094 - CmoCh06G016120.1 Cmo06g01612 385174

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01612 649 Pfam 3-beta hydroxysteroid dehydrogenase/isomerase family 16 303 IPR002225 GO:0003854|GO:0006694|GO:0016616
Cmo06g01612 649 Pfam Reticulon 444 607 IPR003388 -
Cmo06g01612 649 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 11 401 - -
Cmo06g01612 649 Gene3D - 6 395 - -
Cmo06g01612 649 ProSiteProfiles Reticulon domain profile. 444 649 IPR003388 -
Cmo06g01612 649 PANTHER 3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 3 11 401 - -
Cmo06g01612 649 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 10 393 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01612 K23558 3BETAHSDD; plant 3beta-hydroxysteroid-4alpha-carboxylate 3-dehydrogenase [EC:1.1.1.418] - csv:101212494 943.725
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01025 Cmo-Chr5:8262149 Cmo06g01612 Cmo-Chr6:11267763 7.76E-129 dispersed
Cmo06g01612 Cmo-Chr6:11267763 Cmo09g00027 Cmo-Chr9:135014 4.00E-20 dispersed
Cmo06g01612 Cmo-Chr6:11267763 Cmo01g02097 Cmo-Chr1:14532599 4.22E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1274 . . . . . . . . . . . . Car06g01373 . Sed12g0690 . . Bhi01g01193 Tan10g1204 Cmetu06g2044 . Hepe05g1297 . Lcy11g1256 . . . . . . . . . . Cone11ag0658 . . . . . Blo07g00114 . . . . . Bma06g01439 . Cmo06g01612 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011479 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01612 Cmo_Chr06 FPKM 22.269333 23.015093 22.610355 23.694752 27.418844 30.051847 31.244167 57.539871 54.617977 53.117687