Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01614 ATGATTAAAGATGAGCTTGAATGGATTGAAAGAGTGAAATCAGGAGGGAATGTTCCATTTCTTGGTGCAAATGCTGACCATTCAAATTGTTGGGGTTCTCCCCATGGGGACAAGTTCCTGGTGAGAGGTCCAGAGTATTTTTCAACTAAGGTGAAAGTTCCTGCAGGCGAAACGCTTCTAAAACCTCTCGGGTTCGACTGGATAAGGAGTTCTGCAAAGATTGGAGAGATATTGAACCATCCAAACAGTCGTGTTCAGAAGGCTATTGAGGATTCATTTCCTACAGGTCCAAGGCCTTTTATCTGGGCGTTTAATCTACAACTTCCAAGCAAAGAGAATTACAACATTGTTTCTTACTTTGCATCCACAGAGCCCATTACCAAAGGCTCCTTGATCGACCAGTTCCTTAAAGGTGACGACCACTTCAGAAACTCGAGGCTTAAAATGATTGCTGATATTATAAAAGGCCCTTGGATTGTGAAAAAGGCTGTTGGGGAGCAAGCGATCTGCGTGGTCGGGCGTATGCTTTCGTGTAAATACGTCGTAGGCGACAACTTTTTTGAAGTCGACATCGACATTGGATCGAATATTGTGGCGAAGGCCATGTTTCATTTGGTGTTTGGTTACTTCACAGCCATGACAGCTGATGTAGCGTTTCTGATTGAAGGTCAAACAAAATGTGAGCTTCCTGAACGAGTTCTCGGGTGTTTTAGATTCTCTGATCTGAATCCTGCTTCAGCTATGCCAATGGAGGCATCTATTTGGTTGGAGAGTGATGCTACCAGTCTGCAATCTTCTATGGCTACAGGGCTGTGGAAATCAGTTCGGCTCGAACCCTCTCTCTCAGCTTCCGGCCTCGACCTCTCCAATGGTGTCAAGACTGCTGTCTGGACCCAACTCCGTAGCATCCCATCCTTGCAATTCGATGCTGGCAAGGTGACCTATGATGCTAAGGACCCATCTATCCGGTCTTTCGAAAACGCGGAAAGGTTGAATGTGAAGGTTATGGGCAAAGAGTATTTGAGGGATAACTTTGTAGGGCTCTACAATGTGCGATCAGCCAGTTCCAACATGTCCGCCCATCAGAGACGTGTCCTTGAGCGCCTCGCTATTGCTAGAAAAAATGGAGTGACGCAAAACCAACTTGCTAAAGAATTTGGGATTGAAGGAAGAAACTTCTTTTATGTAGTGAAGAGCCTTGAGTGTCAAGGGTTAATTACGAGGCAATCTGCAGTTGTCCGAACTAAAGAAGCTGTAAATACTGGGGAGTTGAGAAATAGTCCAATTGTGAGTACCAATTTGATGTACTTGCACCGATATGCAAAGCATTTGGGCTGTCAACAGAAATTTTGGATTACTGTGGAAGAAAATAATATTGAGCAGCTTGGAGACCCAGTAGAAAGTGCCGCTGATGAAGATGGTATGCCTGTAAAATGCATCAAGGAAGACGTGTTTGTGAAGGATTATTTACCAAAAATGGAAGCTATATGTGATAAACTTGAAGCAGCCAATGGAAAGGTTCTTGTTGTTTCTGATATTAAGAAGGATCTTGGTTATACTGGATCTTCTTCAGGGCATAAAGCTTGGAGAGAGGTCTGTAATAGATTGGAAAGGGCTCACATTATTGAGGTGTTTGAGGCTAAAGTGGACAATAAGTTTGATTGTTGTCTACGTCTGCTAAAGAAGTTCTCTCCAAAGTGTTTTGAGACAAGTGCTCTTGGGGGAGATGATAGTTCTGGTTATAAACATCATATGAAATTTGGGAGGAAATGTCAAGTAACTGATCAACTCACTGAGCTTGCTATAGAGCATCAAATCTATGATATGATTGATGCTGCTGGCTTTGAGGGCATAACAGTGATGGAGGTTTGTAAGAGGCTTGGAATTGATCACAAAAGAAACTATGGCCGACTTGTCAATATGTTTACTAGATTTGGAATGCATCTTCAAGCTGAAACTCACAACAAATGCAATCTTTATCGAGTGTGGACACGTGGGAATTTCAAGCCTGAATATAATAGTCAATTTTTTCATAAATCAAAAGATGCAAATAATGAAATTGAAAATTGCATTAATCATACTTCCAGTGTAAATGATACTAAGAAGTTAGCTGAAACAACTTCTCAAAGTAGCTTTGCAAAGGCTGTAGACACAAATTTGAAAGTTGACAGTGCAAGTCGCAGAACAACAGGGGATGGAAAAATGAAAACTGAAGTTAATGATAAGCTGCATGGCGATCGTGAGACTGACCTCAGAGTTATCCATTTGCCACAAGAGTCAGTTTCTATGCCAACATGCTCCAATCCTGATGTAGAACCCTGTTCAGTGAATGCAGGCGTCGAAACAAACTCTGGATTAATAACACCTCCAGCGGCTCTGTTAAAATCATCAGTTTCTGTATCACATCAGAAGTATCCGTGTTTACCTCTTACTGTGGGTAGTGCTAGGAGGGAGCAAAGAATTCTTGAACGGCTACAGGATGAGAAGTTTGTTTTGAAAGGCGAGCTTTTTAGGTGGATTGTTGATCAGGAGACAGACAAAACCACAACAACAGATAGAAGAACTATTTTCCGAAGTATAAACAAATTGCAAAGTGAAGGACACTGTAAATGCATAGACATCAATGTTCCTGTTGTCACAAATTGTGGCCGTACTCGTATCACCCAGGTGATTTTGCATCCTTCTATTGAGACTTTATCTCCTCAACTTCTAAGTGAAATTCATGATAAAATGAGGTCATTTGAAGCCCAAAGTCGTGGTCATAACTCAAAAAAGGCGAAGAGGAAAGTGTTGCTTCCTGTATTAGAAGGTGTCCAAAGGACACAGCACTATATGGATCCTGACATTGCTGCAGTACGATCAGAAGCCATGCGTGCAAATGGATTTGTACTGGCAAAAATGATCCGTGCAAAGCTGCTTCATTGTTTTTTGTGGGATTACCTAAACTGTTCGGATGATTCTGGTGGTACTTCCTCATCTGAAAGATTTGTCCATGATCTGAAAAATCCTCACACTAGCTACAAGCCATTTTTATTAGAAGACGCAATTAAGTCGATCCCAGTTGAGCTTTTCCTTCAAGTTGTTGGGTCTACTAAAAAATTTGATGATATGTTGGATAAATGTAAGAGGGGTTTGTCACTTGCTGACCTTGCTCCTGAGGAGTACAAGCATATGATGGATGCTAATGGTACTGGAAGGCTCTCGGTGATTATTGATATTTTACGGCGTTTGAAGTTAGTTAGGTTTGTAGCTGCAAATACAGGCAATGTCAATGATTGTGGCCGTGCCACTTTAAAACATGCACTGGAGCTTAAACCTTACATTGAGGAACCTGTTTCAAAAGATGCTACTAGATCTTTGATGAATAAGTGTCTAGATCTTCGGCCAAGAATTAGGCATGACTTTACGCTGTCAAGTAGGCAAGCTGTCAATGAGTATTGGCAAACTTTTGAGTATTGCTATGCCACGGCTGATCCTAGATCTGCTCTGCTTGCATTTCCTGGGTCTGCTGTTCGCGAGGCATTTCTTTTCCGTTCATGGGCTTCAGTTCGGGTTATGACAGCCGAACAGCGTGCTGCACTCCTGGAGCTTGTGGCAAGGAGGGATCCAAGTGCAAAACTTTCATATAGAGAGTGTGACAAAATAGCAAAGGATCTTAATCTGACATTAGAACAGGTTCTACGTGTGTATTATGATAGGCGACAGGAACGTCTTAATAGCTTTGATGAAGGGACAGACAAGGAGTCTAGACAAAAAATTAAAGGCCATTCATTGAGGAGAAAAAGATTACCAAAAGAGAGGCCAGGGAAGCGTGCACGGTATGATGATGTCAGCAAGCAGTCGGATGAAGCAAGGGTCACCACGTTTCCTGAAACTTCTATTTCATCTGATGTTAAAGATAAACATTTGGCTGCTAATTCAGGAGAGCAGAACAATCCTTCGCAAGAAATTTTTGAGGATGGCGATCATCAAGAAACTGTAGAGGAATTTGTGTCTAAAGAGGAAGGCGAGGCACACTGTTCTGTTGCTTCTTCAATGACAAAGTCAACTCGTCAAAGAAGGTTTATATGGACTGATGAAACAGATAGGCAATTGATCATCCAATATGTCAGATACCGTGCATCTCGAGGTGCAAAATTTTCTCGAACAAATTGGTGTGCTATCTCTAACTTGCCAGCACCTCCAGGTACTTGTAAAAAAAGAATGGCATGGCTGAATGGCAGTCTAAGATTTAGAAAACTTGTAATGCGGCTTTGTAACATTCTTGGCAAGCATTACGTGAAGTACCTGGAAAAATCGAAGAACGCATCGGTTCATCAAGATGACCCCAAAGTCATCGCAACAAGTTCTAATGGGAATGCATCGGTTCATCAAGATGACCCCAAAGTGATCGCAACAAGTTCTAATGGGAAAGCTCTTAATGGGAATAGTGGCGACAGTGAACATTACAGTGAGTTGGATCTGCAGGAAGAGCAATGGGATGATTTTGATGATAAAGATGTAAAGATGGCCCTTGATGAGGTTCTTCATTACAAGAAAATGACAATGTTGGAGGACTCAAAACGAGTTGGATCTGTCTATGGTGACTTTTTGGATGCAAATGAATCTGGATTTACGTCTGCCACTCAGAGTGCAGACCTGGGAGGAGAGCAATGTCAATTTTCTAGGGGAAGATCAAAGTCAAGAAGCCTTCATCGGCGGTTGATGAAGATTTTGAATGGCAGGCATGTCAGCAAAGAAGTATTTGAATCATTGGCTGTTTCTAATGCTGTTGAGCTATTTAAGCTTGTTTTCTTGAGCACCTCAACTGCTCTAGAAGTACCTAATCTCCTTGCTGAAAATTTAAGGCGTTACTCAGAACATGATCTTTTTTCAGCTTTTAGCCACCTGAGAGAAAAGAAAATCATGATTGGAGGCAACAATAATGAACCTTTTGTGCTCTCACAAAGTTTTCTGCATAGCATTTCAAAGTCCCCGTTTCCAGCGAACACTGGAGAGAGAGCTTCCAAATTTTCTAAGTTTCTGCATGAAAAAGACAAAGATCTCGTGGAGAATGGGATTAATATTCCTTCTGATTTACAATGCGGAGATATTTTCCATTTGTTTGCTCTAGTTTCTTCAGGAGAGTTGTCTATTTCTTCTTGCTTGCCCAACGATGGCGTTGGAGAACCCGAAGACTTGAGAAGTTCAAAACGAAAAGTTGATAGCTGTGAACTGTGGGTGGACACTCGGGCTAAGAAGATGAAATTTGCACCAGCAGAGGGTGAAATTATTTCTCGTCGAGAAAAAGGTTTTCCTGGGATTTTGGTTTCTGTTTGTCGTACTACAATTTTAAGAACAGATGCCATGGAGCTGTCAGATAGTTGGAATTGTATTGAAGACCAACATTTTGGTGGGAATTATAGATTTCACGTTTCACCTACTCACAACAGTATTTCATTTGACAATGTGGAATCACTGTACGATACAGATGGGGTTGTATCTCTAGGAAATCGTGGTGAGTCAACTTGGCAAGCTATGACAGATTTTGCAGATCATTTGATGTCGGTAGGTTGTTGTCAAGAACAAATGAGTGTCATCTCTCCAGAGGTCTTTGGGTTGGTTTATTCTGCAATTCAGTTGGCTGGTGACCAGGGTTTAAGCATAGAGGAAGTTTCCCAGGTGGCTAATTTACAAGGAGACAAGCTGCCTCAACTTATCGTTGATGTTCTTCAAACATTCCAACGGGTGCTGAAGGTGAATTCATTTGACAGTACTCGAATTGTTGATGCTTTATATCGTCCCAAGTACTTTTTGACATCGATATCTGGTTCGAATCGAAACCGTGCTACTCCCTCATCAGTCGATATGCTTGGAAGAAGTAATGGCCAATTGGTTTTCCATCCAGAAAACTACAACATTGGGGAGAAGAATCCAGATAATCACATGTCTGTTGCTGCAAATTCCCAGATGGAAAATAAAATGGTTGTTGGTGAGGTGCACAAAGTAACGGTTCTCAATCTTCCTCCAGAAGTTGATGACAACACAAAGGAAAGTCAAACTAGCAGTATGCATCAACGCAATCCCAAGGAGAAAACCATTTTAAACACAACAGGGAATGAGAATGGATTGTTTTGCGCCTCTTCTGATGGTTTGAATATGCCAATACTCCCATGGATAAACGGAGACGGGACGACTAACAAAATTGTCTACAAGGGGCTTAGAAGGCGGATCTTAGGAATTGTAATGCAAAACCCAGGAATACTGGAGGTTGCGATTATACGACGGATGAACGTCTTGAATCCCCAGAGTTGTAAGAAGCTGTTAGAGTTGATGATATTAGATAAGCACCTCATAGTGAGGAAGATGTATCAACGTACGTTCAGTGGCCCCCCTGGTATTCTTGGAACGCTCCTCGGCACGAGCCACAGAGACTCGAAGTTTGTTTGCCATGATCACTACTTTGCAAATCCCATGAGTACCTCGCTGCTGTAG 6474 41.88 MIKDELEWIERVKSGGNVPFLGANADHSNCWGSPHGDKFLVRGPEYFSTKVKVPAGETLLKPLGFDWIRSSAKIGEILNHPNSRVQKAIEDSFPTGPRPFIWAFNLQLPSKENYNIVSYFASTEPITKGSLIDQFLKGDDHFRNSRLKMIADIIKGPWIVKKAVGEQAICVVGRMLSCKYVVGDNFFEVDIDIGSNIVAKAMFHLVFGYFTAMTADVAFLIEGQTKCELPERVLGCFRFSDLNPASAMPMEASIWLESDATSLQSSMATGLWKSVRLEPSLSASGLDLSNGVKTAVWTQLRSIPSLQFDAGKVTYDAKDPSIRSFENAERLNVKVMGKEYLRDNFVGLYNVRSASSNMSAHQRRVLERLAIARKNGVTQNQLAKEFGIEGRNFFYVVKSLECQGLITRQSAVVRTKEAVNTGELRNSPIVSTNLMYLHRYAKHLGCQQKFWITVEENNIEQLGDPVESAADEDGMPVKCIKEDVFVKDYLPKMEAICDKLEAANGKVLVVSDIKKDLGYTGSSSGHKAWREVCNRLERAHIIEVFEAKVDNKFDCCLRLLKKFSPKCFETSALGGDDSSGYKHHMKFGRKCQVTDQLTELAIEHQIYDMIDAAGFEGITVMEVCKRLGIDHKRNYGRLVNMFTRFGMHLQAETHNKCNLYRVWTRGNFKPEYNSQFFHKSKDANNEIENCINHTSSVNDTKKLAETTSQSSFAKAVDTNLKVDSASRRTTGDGKMKTEVNDKLHGDRETDLRVIHLPQESVSMPTCSNPDVEPCSVNAGVETNSGLITPPAALLKSSVSVSHQKYPCLPLTVGSARREQRILERLQDEKFVLKGELFRWIVDQETDKTTTTDRRTIFRSINKLQSEGHCKCIDINVPVVTNCGRTRITQVILHPSIETLSPQLLSEIHDKMRSFEAQSRGHNSKKAKRKVLLPVLEGVQRTQHYMDPDIAAVRSEAMRANGFVLAKMIRAKLLHCFLWDYLNCSDDSGGTSSSERFVHDLKNPHTSYKPFLLEDAIKSIPVELFLQVVGSTKKFDDMLDKCKRGLSLADLAPEEYKHMMDANGTGRLSVIIDILRRLKLVRFVAANTGNVNDCGRATLKHALELKPYIEEPVSKDATRSLMNKCLDLRPRIRHDFTLSSRQAVNEYWQTFEYCYATADPRSALLAFPGSAVREAFLFRSWASVRVMTAEQRAALLELVARRDPSAKLSYRECDKIAKDLNLTLEQVLRVYYDRRQERLNSFDEGTDKESRQKIKGHSLRRKRLPKERPGKRARYDDVSKQSDEARVTTFPETSISSDVKDKHLAANSGEQNNPSQEIFEDGDHQETVEEFVSKEEGEAHCSVASSMTKSTRQRRFIWTDETDRQLIIQYVRYRASRGAKFSRTNWCAISNLPAPPGTCKKRMAWLNGSLRFRKLVMRLCNILGKHYVKYLEKSKNASVHQDDPKVIATSSNGNASVHQDDPKVIATSSNGKALNGNSGDSEHYSELDLQEEQWDDFDDKDVKMALDEVLHYKKMTMLEDSKRVGSVYGDFLDANESGFTSATQSADLGGEQCQFSRGRSKSRSLHRRLMKILNGRHVSKEVFESLAVSNAVELFKLVFLSTSTALEVPNLLAENLRRYSEHDLFSAFSHLREKKIMIGGNNNEPFVLSQSFLHSISKSPFPANTGERASKFSKFLHEKDKDLVENGINIPSDLQCGDIFHLFALVSSGELSISSCLPNDGVGEPEDLRSSKRKVDSCELWVDTRAKKMKFAPAEGEIISRREKGFPGILVSVCRTTILRTDAMELSDSWNCIEDQHFGGNYRFHVSPTHNSISFDNVESLYDTDGVVSLGNRGESTWQAMTDFADHLMSVGCCQEQMSVISPEVFGLVYSAIQLAGDQGLSIEEVSQVANLQGDKLPQLIVDVLQTFQRVLKVNSFDSTRIVDALYRPKYFLTSISGSNRNRATPSSVDMLGRSNGQLVFHPENYNIGEKNPDNHMSVAANSQMENKMVVGEVHKVTVLNLPPEVDDNTKESQTSSMHQRNPKEKTILNTTGNENGLFCASSDGLNMPILPWINGDGTTNKIVYKGLRRRILGIVMQNPGILEVAIIRRMNVLNPQSCKKLLELMILDKHLIVRKMYQRTFSGPPGILGTLLGTSHRDSKFVCHDHYFANPMSTSLL 2157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11276959 11292810 - CmoCh06G016140.1 Cmo06g01614 385176

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01614 2157 CDD Tau138_eWH 811 907 IPR035625 -
Cmo06g01614 2157 PANTHER GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 1 271 2137 IPR044210 GO:0000127|GO:0003677|GO:0006384
Cmo06g01614 2157 MobiDBLite consensus disorder prediction 2003 2022 - -
Cmo06g01614 2157 MobiDBLite consensus disorder prediction 2006 2022 - -
Cmo06g01614 2157 Gene3D - 341 414 IPR036388 -
Cmo06g01614 2157 MobiDBLite consensus disorder prediction 1268 1282 - -
Cmo06g01614 2157 Pfam B-block binding subunit of TFIIIC 360 442 IPR007309 -
Cmo06g01614 2157 Pfam Protein ENHANCED DISEASE RESISTANCE 2, C-terminal 31 242 IPR009769 -
Cmo06g01614 2157 SUPERFAMILY Winged helix DNA-binding domain 346 410 IPR036390 -
Cmo06g01614 2157 MobiDBLite consensus disorder prediction 1241 1299 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01614 K15199 GTF3C1; general transcription factor 3C polypeptide 1 - csv:101216506 2832.36
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01614 Cmo14g01549 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00342 Cmo-Chr5:1534355 Cmo06g01614 Cmo-Chr6:11276959 5.76E-69 dispersed
Cmo06g01614 Cmo-Chr6:11276959 Cmo12g00326 Cmo-Chr12:2034308 3.15E-66 dispersed
Cmo14g01549 Cmo-Chr14:12384828 Cmo06g01614 Cmo-Chr6:11276959 4.08E-153 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1243 . . . . . Bpe14g01057 . . . . Cma06g01619 Cma14g01515 Car06g01375 Car14g01339 . Cpe08g00107 Cpe03g01274 . . . . . . . . . . . . . . . . . . . . . . Blo02g00443 . . Bda13g00256 . . Bma02g00974 . . Cmo06g01614 Cmo14g01549 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004470 1 5 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 3 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01614 Cmo_Chr06 FPKM 6.006472 6.00073 7.355399 7.101212 6.784726 6.410288 6.939798 11.431145 10.849204 11.78642