Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01617 ATGTACCAATCAACTTCCTCCTCTTCTTCCTCTCACAATTCCATGCCCTCCTCCCACGCCGGTGGTGGAGGTCTCACTCGCTACGGTTCTGCACCTGGCTCTTTGCTGAATTCGGCGGTCGATTCTGTGATCGGGAAACGGCATCCGGACTCCGATGCGTTTCTCCGTACGCCGCCGTCGTTTGGCGGTCACTTCTTCTCCTCCGCTGAGTCTTCCGTTGTGGAATCCTCTCGGAAGGTTGTTCAATCGTCGTCTACTTCCGACGATCTGAAATCGTCGGCGGCGGCGGCGGCGGCTGCCTTGCAACGGTCGTACGGAATCCACGATTTGGCGCTTGAGGATTTCTCTACGGCGAGAGATTTTAATAGCAATGGTGGCCAATCGTCTTCCTCTTCGCCGTTGGTTCGCCAGAGAAGCTCGCCGGCTGGATTTCTCGGCCATCTCTCCGTCGCTGAAGGAACCGGAGGGTTTTCATTGACAAGGGGAGGAGGAGGAGGAATTGGGAGGTTAAAGTCACAGCTGAGCTTCAGTGGTGGGCAGGATTCGGTGTCTCAAATGTCTTCCATGAGTGAAAGTGTTGTGGAGGGTAGCAGCTCCCATTCCTTTGCCCCCACAGCCTTTGCCATGGACTCTTGGGACACCTCCAACTCCATTGCCTTCGCTGCCCCTCATCCCAAACGATCCAAGCTTCTTCACTCCGATGGAGACTTTTTCACCGGCCTCGACTCTCAGTTTAGTCTGCCACAAACAAGTTTTGAAATGGCAACTGTGGAGAGGTTGCTTCAAATCCCAGAAGACTCCGTGCCGTGTAAGATTCGAGCCAAACGTGGCTGTGCCACTCATCCTCGCAGCATCGCCGAAAGGGAGAGGAGAACTAGAATCAGTGGAAAATTGAAGAAACTTCAAGAACTTGTTCCGAACATGGATAAGCAAACGAGCTATTCAGACATGTTGGACTTAGCAGTGCAGCATATCAAAGGTCTTCAAAATCAAATTCAGAAGCTTAACAAAGAAGTTGAGAATTGCACGTGTGGAAGCAAAGAATGCTCCTAA 1053 52.04 MYQSTSSSSSSHNSMPSSHAGGGGLTRYGSAPGSLLNSAVDSVIGKRHPDSDAFLRTPPSFGGHFFSSAESSVVESSRKVVQSSSTSDDLKSSAAAAAAALQRSYGIHDLALEDFSTARDFNSNGGQSSSSSPLVRQRSSPAGFLGHLSVAEGTGGFSLTRGGGGGIGRLKSQLSFSGGQDSVSQMSSMSESVVEGSSSHSFAPTAFAMDSWDTSNSIAFAAPHPKRSKLLHSDGDFFTGLDSQFSLPQTSFEMATVERLLQIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYSDMLDLAVQHIKGLQNQIQKLNKEVENCTCGSKECS 350
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 11301985 11304563 + CmoCh06G016170.1 Cmo06g01617 385179
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01617 350 Gene3D - 279 347 IPR036638 GO:0046983
Cmo06g01617 350 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 278 328 IPR011598 GO:0046983
Cmo06g01617 350 Coils Coil 318 345 - -
Cmo06g01617 350 CDD bHLH_AtbHLH_like 283 335 IPR045239 -
Cmo06g01617 350 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 24 343 - -
Cmo06g01617 350 MobiDBLite consensus disorder prediction 1 20 - -
Cmo06g01617 350 PANTHER TRANSCRIPTION FACTOR BHLH129 24 343 - -
Cmo06g01617 350 Pfam Helix-loop-helix DNA-binding domain 283 329 IPR011598 GO:0046983
Cmo06g01617 350 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 281 342 IPR036638 GO:0046983
Cmo06g01617 350 SMART finulus 284 334 IPR011598 GO:0046983
Cmo06g01617 350 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01617 Cmo-Chr6:11301985 Cmo14g00440 Cmo-Chr14:2099332 1.31E-46 dispersed
Cmo14g01546 Cmo-Chr14:12342825 Cmo06g01617 Cmo-Chr6:11301985 3.40E-108 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10041 PF00010 HLH 9.20E-09 No_clan Cmo TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01617 - - bhj:120087044 432.18