Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo06g01617 | ATGTACCAATCAACTTCCTCCTCTTCTTCCTCTCACAATTCCATGCCCTCCTCCCACGCCGGTGGTGGAGGTCTCACTCGCTACGGTTCTGCACCTGGCTCTTTGCTGAATTCGGCGGTCGATTCTGTGATCGGGAAACGGCATCCGGACTCCGATGCGTTTCTCCGTACGCCGCCGTCGTTTGGCGGTCACTTCTTCTCCTCCGCTGAGTCTTCCGTTGTGGAATCCTCTCGGAAGGTTGTTCAATCGTCGTCTACTTCCGACGATCTGAAATCGTCGGCGGCGGCGGCGGCGGCTGCCTTGCAACGGTCGTACGGAATCCACGATTTGGCGCTTGAGGATTTCTCTACGGCGAGAGATTTTAATAGCAATGGTGGCCAATCGTCTTCCTCTTCGCCGTTGGTTCGCCAGAGAAGCTCGCCGGCTGGATTTCTCGGCCATCTCTCCGTCGCTGAAGGAACCGGAGGGTTTTCATTGACAAGGGGAGGAGGAGGAGGAATTGGGAGGTTAAAGTCACAGCTGAGCTTCAGTGGTGGGCAGGATTCGGTGTCTCAAATGTCTTCCATGAGTGAAAGTGTTGTGGAGGGTAGCAGCTCCCATTCCTTTGCCCCCACAGCCTTTGCCATGGACTCTTGGGACACCTCCAACTCCATTGCCTTCGCTGCCCCTCATCCCAAACGATCCAAGCTTCTTCACTCCGATGGAGACTTTTTCACCGGCCTCGACTCTCAGTTTAGTCTGCCACAAACAAGTTTTGAAATGGCAACTGTGGAGAGGTTGCTTCAAATCCCAGAAGACTCCGTGCCGTGTAAGATTCGAGCCAAACGTGGCTGTGCCACTCATCCTCGCAGCATCGCCGAAAGGGAGAGGAGAACTAGAATCAGTGGAAAATTGAAGAAACTTCAAGAACTTGTTCCGAACATGGATAAGCAAACGAGCTATTCAGACATGTTGGACTTAGCAGTGCAGCATATCAAAGGTCTTCAAAATCAAATTCAGAAGCTTAACAAAGAAGTTGAGAATTGCACGTGTGGAAGCAAAGAATGCTCCTAA | 1053 | 52.04 | MYQSTSSSSSSHNSMPSSHAGGGGLTRYGSAPGSLLNSAVDSVIGKRHPDSDAFLRTPPSFGGHFFSSAESSVVESSRKVVQSSSTSDDLKSSAAAAAAALQRSYGIHDLALEDFSTARDFNSNGGQSSSSSPLVRQRSSPAGFLGHLSVAEGTGGFSLTRGGGGGIGRLKSQLSFSGGQDSVSQMSSMSESVVEGSSSHSFAPTAFAMDSWDTSNSIAFAAPHPKRSKLLHSDGDFFTGLDSQFSLPQTSFEMATVERLLQIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYSDMLDLAVQHIKGLQNQIQKLNKEVENCTCGSKECS | 350 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 11301985 | 11304563 | + | CmoCh06G016170.1 | Cmo06g01617 | 385179 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo06g01617 | 350 | Gene3D | - | 279 | 347 | IPR036638 | GO:0046983 | |
Cmo06g01617 | 350 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 278 | 328 | IPR011598 | GO:0046983 | |
Cmo06g01617 | 350 | Coils | Coil | 318 | 345 | - | - | |
Cmo06g01617 | 350 | CDD | bHLH_AtbHLH_like | 283 | 335 | IPR045239 | - | |
Cmo06g01617 | 350 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 24 | 343 | - | - | |
Cmo06g01617 | 350 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cmo06g01617 | 350 | PANTHER | TRANSCRIPTION FACTOR BHLH129 | 24 | 343 | - | - | |
Cmo06g01617 | 350 | Pfam | Helix-loop-helix DNA-binding domain | 283 | 329 | IPR011598 | GO:0046983 | |
Cmo06g01617 | 350 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 281 | 342 | IPR036638 | GO:0046983 | |
Cmo06g01617 | 350 | SMART | finulus | 284 | 334 | IPR011598 | GO:0046983 | |
Cmo06g01617 | 350 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo06g01617 | Cmo-Chr6:11301985 | Cmo14g00440 | Cmo-Chr14:2099332 | 1.31E-46 | dispersed | |
Cmo14g01546 | Cmo-Chr14:12342825 | Cmo06g01617 | Cmo-Chr6:11301985 | 3.40E-108 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10041 | PF00010 | HLH | 9.20E-09 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo06g01617 | - | - | bhj:120087044 | 432.18 |