Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01632 ATGAAGAAGGCCTTCGATCAAACTGTTAGGGACTTAAAACGAGAGGTCAATAAGACCGTGCTCAAAATTCCGAAAATAGAGCAGAAGGTTTTGGATGCCACTAGCAACGAGCCTTGGGGTCCTCATGGATCACTTCTTGCAGATATAGCACAGGCAACTCGAAATTATCATGAATATCAAATGATTATGGGAGTAATCTGGAAGCGGATTAACGATACTGGCAAGAATTGGAGGCATGTTTACAAGGGTTTGACCGTTTTGGAGTACTTGGTGGGTCACGGGTCGGAGCGTGTCATAGATGACATCAGAGAACATGTCTATCAGATATCGACCTTATCTAATTTTCAATACATCGACTCGAGCGGGAGGGATCAGGGTAACAATGTTAGAAAGAAATCGCAAAATCTTGTTGCCCTTGTAAATGATAAAGAGAGGATTGTTGAGGTCAGACAGAAAGCTGCTGCTAATAAGGACAAGTTTCACAGTGCAGCATCTATGGGCAGTATGTATAGACCAAGTGCAGGAGCATATGACGACCGCTATGAAGGAAGATATGGAAGCCGTGATGGAGACCGAAATGTTGATTCTTATGGGAGGGAAAGAGAATATGGTTTTAGAGATGAACGTTCCGGTGGAAATGAGGATTCATATGGTCGTGATTATGAAGACCGCTATAATAGAGATGGTTATAGGGATGATGATTATCGAGGAAGAAGCCGAAGCGTTGATGACTATCAGTATGGTTCAAGGAGCCGGAGCTCTGACAGAAATGGAGAACGTACATATGACGATGGTCAAGTTTCTTCTCGCAACAACGATACTAGAGCGAACGAGCCATCTCGGGATGAAAGGCCGCTTGAACGTAAATTTTCGGAACAGAATATTGGTGCTCCTCCCAGTTACGAAGAAGCTGTGACTGAATCTGAAAGCAATGTGCAAAGTCAAAGAGATGTTGAAGCTCCACCGACTGCTGCTCCGAGAGCATTTCCCCCACCCACATCCAGTACTCAAAGCCAGCTAACGACTCAGGGAACTGCTGCATCTCCACCTACCCAGGGACTTGATGGTTCTGATGAATTCGACCCTCGTGGTTCAGTTCCAGCTGCTCCACCTGCCACAAGCAATTTAGAGACAAATTTATTAGACTCCTTGGCCTTAGTGCCTGTTGGGCCAGTAACATCAACTGCAGACTATGAGGGTCATGTTCAGACAAGCTCTGCTGTGGGATACCATGCTCAAAATCAGACTTTCGAAGACGCATTCGGTGACTCGCCTTTTAAAGCCATTTCTTCCTCTGATGTCCAAGATCAAGCACATGTCCAGCATGGGGAATCATTTTCTGTAGCAACTTATTCCACACCGAACATCCCCGTTCAACCCCAACCAAATTTTCCGCAGCCTCGTGAAGAGTCTCTGCAACATCAAAATATTGGTGTACTAGCTGATCTCCTTCCTCCTCCTGAACCTTTACCTGCTGTTGTTTCACAGCCTGCATTCACAGTATCAAACAGCCAACAAGCTGTATCTGGCTTGCCTGCACACCCAAATTCTAATAACTTGGGGACTTATCAGCAACATGGAAACGTAGCTCCCGTAAATTTTCAAAATCCAACAGAACCCGGGAGAGAGTTTAACAACGGGATGTTCATGGTTCCGGGAAGTGCACCGACACATGTCAATTCATATATGGTTCCTCCAAATGCTGGACCTAGTACACATCCCAACAATTTTGGATATTCTCAGGATGGTTCGGTAGCTCCCACGAGTTCTCATGTCGCACTTCAAACTACTCAACCGCCTGCTCAGCTTCCTAGTGGGAACTTCAATCCGCCACACGCCTCTGTAGCTCCAGTAGCTTCTCAAGTGTCTTACCAAGCCCCTAATTTTCCTGTTAACGTATCTAACCCTGATGTTATGGGTAGTTTTCAAGCAGGAAACCATACATCCATGGCTTCCCAGCAAATTCCTCCATCTGGATCGCTTTCAAATGCATCTCAACCTTCAAAGAACAAGTTCGAGACCAAGTCTACAGTATGGACTGACACATTAAACCGAGGGCTTGTCAATTTAAACATATCTGGATCTAAAACAAACCCAATGGCGGATATTGGTGTTGATTTTGAAGCCCTCAATAGGAAAGAGAAGAGGATGGAGAAGCCTAGTACAGCTCCAGCGATATCTACCATTAACATGGGTAAAGCTATGGGATCTGGTTCTGGGATTGGCCGAGCCGGTGCGAGTGCACTAAGGCCACCTCCAAACGCAATGTCGGGTCCGGGAATGGGAATGGGTATGAACCCCAACCCTGGCATGGGCATGGGTATGAGAGGAGGATATGGAGGCATGAATCAACCCATGGGTGGCATGGGGATGAATATGGGTATGGCACAACACGGAATCCAGATGCAGCAGCCTCGAGCGAACATGCCTGGTGCATACAACCCAATGATGGGTGCTGGTGGCTACGCCCCTCAACAGCCACCCATTAAATATTGGAAGGTCTGCATCCAACCCAAGATTTTCTTATTTGAAGCTATGTTTTCCCCTGAAAGAAGGCCTCGCCTTCATTGTTTTCTACCATCTCGTGTTAGTCATTTTTTTTGTGGGTTGAGTTCTGCTTTGAATTTTGTGTGTATTCAATGA 2643 46.01 MKKAFDQTVRDLKREVNKTVLKIPKIEQKVLDATSNEPWGPHGSLLADIAQATRNYHEYQMIMGVIWKRINDTGKNWRHVYKGLTVLEYLVGHGSERVIDDIREHVYQISTLSNFQYIDSSGRDQGNNVRKKSQNLVALVNDKERIVEVRQKAAANKDKFHSAASMGSMYRPSAGAYDDRYEGRYGSRDGDRNVDSYGREREYGFRDERSGGNEDSYGRDYEDRYNRDGYRDDDYRGRSRSVDDYQYGSRSRSSDRNGERTYDDGQVSSRNNDTRANEPSRDERPLERKFSEQNIGAPPSYEEAVTESESNVQSQRDVEAPPTAAPRAFPPPTSSTQSQLTTQGTAASPPTQGLDGSDEFDPRGSVPAAPPATSNLETNLLDSLALVPVGPVTSTADYEGHVQTSSAVGYHAQNQTFEDAFGDSPFKAISSSDVQDQAHVQHGESFSVATYSTPNIPVQPQPNFPQPREESLQHQNIGVLADLLPPPEPLPAVVSQPAFTVSNSQQAVSGLPAHPNSNNLGTYQQHGNVAPVNFQNPTEPGREFNNGMFMVPGSAPTHVNSYMVPPNAGPSTHPNNFGYSQDGSVAPTSSHVALQTTQPPAQLPSGNFNPPHASVAPVASQVSYQAPNFPVNVSNPDVMGSFQAGNHTSMASQQIPPSGSLSNASQPSKNKFETKSTVWTDTLNRGLVNLNISGSKTNPMADIGVDFEALNRKEKRMEKPSTAPAISTINMGKAMGSGSGIGRAGASALRPPPNAMSGPGMGMGMNPNPGMGMGMRGGYGGMNQPMGGMGMNMGMAQHGIQMQQPRANMPGAYNPMMGAGGYAPQQPPIKYWKVCIQPKIFLFEAMFSPERRPRLHCFLPSRVSHFFCGLSSALNFVCIQ 880
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11381172 11387028 + CmoCh06G016320.1 Cmo06g01632 385194

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01632 880 PANTHER CLATHRIN INTERACTOR EPSIN 2-RELATED 1 825 - -
Cmo06g01632 880 MobiDBLite consensus disorder prediction 275 290 - -
Cmo06g01632 880 ProSiteProfiles ENTH domain profile. 18 150 IPR013809 -
Cmo06g01632 880 SMART enth_2 24 150 IPR013809 -
Cmo06g01632 880 CDD ENTH 26 142 - -
Cmo06g01632 880 Pfam ENTH domain 25 146 IPR013809 -
Cmo06g01632 880 MobiDBLite consensus disorder prediction 177 263 - -
Cmo06g01632 880 Gene3D - 23 163 IPR008942 -
Cmo06g01632 880 MobiDBLite consensus disorder prediction 304 318 - -
Cmo06g01632 880 MobiDBLite consensus disorder prediction 640 675 - -
Cmo06g01632 880 PANTHER EPSIN/ENT-RELATED 1 825 - -
Cmo06g01632 880 MobiDBLite consensus disorder prediction 578 607 - -
Cmo06g01632 880 MobiDBLite consensus disorder prediction 451 471 - -
Cmo06g01632 880 SUPERFAMILY ENTH/VHS domain 6 149 IPR008942 -
Cmo06g01632 880 MobiDBLite consensus disorder prediction 168 375 - -
Cmo06g01632 880 MobiDBLite consensus disorder prediction 330 352 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01632 K12471 EPN; epsin - csv:101208671 1175.61
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01632 Cmo08g00091 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00117 Cmo-Chr5:488092 Cmo06g01632 Cmo-Chr6:11381172 6.78E-11 dispersed
Cmo06g01632 Cmo-Chr6:11381172 Cmo08g00091 Cmo-Chr8:470540 1.43E-44 dispersed
Cmo14g01533 Cmo-Chr14:12247970 Cmo06g01632 Cmo-Chr6:11381172 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1120 . . . . . . . . Cmo08g00091 . Cma06g01633 . Car06g01388 . . Cpe08g00095 . . . . . . . . . . . . . . . . Cone15ag0602 . . . . . . . . . . . . . . . Cmo06g01632 . . . Car08g00073 . . Cpe17g00997 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003028 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 2 2 1 1 12 1 2 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01632 Cmo_Chr06 FPKM 3076.986572 3294.543701 518.065735 527.960754 24.176376 20.663473 22.052597 3.032 2.478304 2.099385