Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01633 ATGGCAATCGCTGTAGCTTCTTCACTTGCCTTCGAAGGGGCTTGTTGCTCGACGTCGCATGCATTCACGAGCAGTTGGAACAGATCTTCTTTCGATGTTCGTGGCAGAAATCCAATATTTGGATCAACAGACTTACATTGGTTGTCTAAGGGCCGTGATCATTGCTTGTCAAAAGTTTCAGTTGCTGCTGATTACCCTGATTCAGTTCCAGATTCATCAAGTTCTTTGACTAACAAAGGCTATCATCCTCTCGAAGATCTAAAAGTTCGTAAAAGAGCACGAAATACTGAACTCACTGCTGCAGAATTAGCCCGGACGACTGTGGAGGTAAATAGCAACGCTTTGGTACTATTTCCTGGAACTGTTCACAATGAACCACATGAACACGTATCATGGGACGAGTTTCAATACGTTCTTGACGATTATGGAGATTTGTTTTTCGAAGTTTTCGACGATGTGAACATGTTAGAAGATCGTGCTGCACCAAATCCTGTGAACGTTTTGATTGGAATGGACGTGAAAATGTATGAAAGTAGGAGGATAATTCGAGATTATAAAGCGGGAGATAGCGGAAATGGTGATATCGTTCCTTTCGATTATGACTATATTGAGGCTGTGGAAACTGATTTGGCTGAATTCCCTGTTGATTGGGGAGTTCCTGATGTGGCTAGCTTGGTTCATCCACTATATTTTGCCAAGTGTATGAATAAGGCTATCTATATGAAATATGAGAGAGAGATGAAGCATCCTTCGAATGGAGTTTCCATGTTGGGATGTCTCAGACCTGTCTATGCTGATGAAGAATCTTATATAAGAAGACTTTTTTACTTTGAAGATAGTGAAGGCTACAATACACAATGGAAAGAAGGTGAAACCTTGAGCTTCGAGTCCGAAAGCGATGGAAGCAGCCGAAGATCCACCCTCTACAGGCTGGAGATAATGAGAATTGAGCTCTTCTCGGTGTACGGAGTTCAGTCTGAAATTGGTTTGCTAGATTTTCAACGTGCCGAACCCGATGTTCTTATGCACTCTACTGCAGAAATTGTCGAGCGTTTTAGTGAGAAGGGTTTTAGGTGCAATATTGCCCTTAAAGCTTTTTGCAAAAAGAGAGGTCTTCGTGTTGAGGATGCTATTCTGCTCGGAGTCGATAGTCTTGGCATCGATGTGAGGGTATGTTTTGGAACAGAAGTACGGACTTTTCGATTTCCCTTTAAAACCCGGGCAACATCTGAAGTTGCAGCAGAGAAGCAGATTCAGCAACTCTTGTTCCCACGGTCTCGTCGTAAAAAACTACGAAGCCATGAGGGGATGGATTGA 1317 42.82 MAIAVASSLAFEGACCSTSHAFTSSWNRSSFDVRGRNPIFGSTDLHWLSKGRDHCLSKVSVAADYPDSVPDSSSSLTNKGYHPLEDLKVRKRARNTELTAAELARTTVEVNSNALVLFPGTVHNEPHEHVSWDEFQYVLDDYGDLFFEVFDDVNMLEDRAAPNPVNVLIGMDVKMYESRRIIRDYKAGDSGNGDIVPFDYDYIEAVETDLAEFPVDWGVPDVASLVHPLYFAKCMNKAIYMKYEREMKHPSNGVSMLGCLRPVYADEESYIRRLFYFEDSEGYNTQWKEGETLSFESESDGSSRRSTLYRLEIMRIELFSVYGVQSEIGLLDFQRAEPDVLMHSTAEIVERFSEKGFRCNIALKAFCKKRGLRVEDAILLGVDSLGIDVRVCFGTEVRTFRFPFKTRATSEVAAEKQIQQLLFPRSRRKKLRSHEGMD 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11388006 11394892 + CmoCh06G016330.1 Cmo06g01633 385195

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01633 438 SUPERFAMILY FMN-binding split barrel 254 422 - -
Cmo06g01633 438 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 10 433 - -
Cmo06g01633 438 Gene3D - 337 436 IPR037119 -
Cmo06g01633 438 PANTHER CREG1 PROTEIN 10 433 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01633 - - - csv:101209157 702.59
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01633 Cmo14g01531 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01633 Cmo-Chr6:11388006 Cmo18g01306 Cmo-Chr18:12503904 2.01E-12 dispersed
Cmo14g01531 Cmo-Chr14:12224439 Cmo06g01633 Cmo-Chr6:11388006 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1133 . . . . . . . . . . Cma06g01634 Cma14g01495 Car06g01389 Car14g01328 . Cpe08g00094 Cpe03g01256 Bhi01g02638 . . . . . . . . . . . . . . . Cone18ag0886 Cone11ag0626 . . . Cme07g01857 . Blo07g00098 Bda11g00469 . . Bpe13g00729 . Bma06g01430 . Cmo06g01633 Cmo14g01531 . . . . . . . . . . . . . Cla07g01580 Cam07g1677 Cec07g1772 Cco07g1735 Clacu07g1661 Cmu07g1627 Cre07g2001 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005311 1 4 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 2 2 1 1 1 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01633 Cmo_Chr06 FPKM 52.208504 59.871239 55.16502 56.848309 36.1726 34.889278 32.348785 38.93914 37.611931 38.395329