Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01636 ATGGTGAGAACGCGAGGCAAGTCCGCCGCTGCCACTCCCCACTCTATCCCCTTCAAGACCGACCGGCCGCCGATCGCCACCGCCATTACGCCGAAAACACCGCTTAGTTGTTCTACATCTATCATTCCTTCCTCACTCAAATCAGTTTTTCTGTACGATTGGTGGCTCACAAAGGCTGATGATGGCGAGGGCTTGGCTGTCGGAGGGTTTGCTTCCAGAGAAGGTGCTGGGGTTAGAGTATTTTATTCTGCAGCGATTTCTAAGAGACATGAAGCCAGCATTCTCGAGGCAATAGATGGCATTGTCATTACTGTCAGTGGCTTCATAAATAGATCACGAACGCTTGAAAATGGCTTTCCTCCGAAGGTGTACAATCATTTCCTTCTTGGTTTTCCCTTCAATTGGAAAGACTATATGGGTTCTAGTTCGGATAAAAAATCCCAGTTCAAGTGTATTAAAGGAAGTACTTCTCATCCTGACCATCCAGGTAGAAGCCATGATTTTGAAGCTGACTTAGACAATCTTGCAGTTACTAGGTTGCGAGATCTCTTTTTGTCCTCCTGTGAAAAATCTAGTCATGACCTCTTTGTGACGAACCGAAATTCAAGTCGTAGTCCAACAAAAAAATTTGAATCTGGACTAGAAACCCTGAAAGGAAGACCTCAACGAGTGAATTCCTATCAATACGTTGATGAGCAAGGTTTCCGGGATGAGAGGAAGTATAGTGATGTAAAGGATCCATTGCACAGTAGTCAAGAAACTGATTCTACGGTGGAAATTGAACCCCAGAATCTAGGAAGCAGAAGTGTTTGCACAAGAAGCATGACCAAGTTGAAAAATTCTAGTAACAGAAGTAAAGAGAGGCTCATATCAGACTCTCACAAGAGAAAAAAGGACCAGGAGAGTAACCCTTCATGTGAAAACTCTGGAAAGAGAACTGGACCGAGAGATCTGCCTGGCCACCATATGGATGATGCTATCTAA 984 44.41 MVRTRGKSAAATPHSIPFKTDRPPIATAITPKTPLSCSTSIIPSSLKSVFLYDWWLTKADDGEGLAVGGFASREGAGVRVFYSAAISKRHEASILEAIDGIVITVSGFINRSRTLENGFPPKVYNHFLLGFPFNWKDYMGSSSDKKSQFKCIKGSTSHPDHPGRSHDFEADLDNLAVTRLRDLFLSSCEKSSHDLFVTNRNSSRSPTKKFESGLETLKGRPQRVNSYQYVDEQGFRDERKYSDVKDPLHSSQETDSTVEIEPQNLGSRSVCTRSMTKLKNSSNRSKERLISDSHKRKKDQESNPSCENSGKRTGPRDLPGHHMDDAI 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11405229 11408372 + CmoCh06G016360.1 Cmo06g01636 385198

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01636 327 MobiDBLite consensus disorder prediction 1 24 - -
Cmo06g01636 327 MobiDBLite consensus disorder prediction 253 279 - -
Cmo06g01636 327 MobiDBLite consensus disorder prediction 280 305 - -
Cmo06g01636 327 Pfam SANTA (SANT Associated) 49 138 IPR015216 -
Cmo06g01636 327 MobiDBLite consensus disorder prediction 232 252 - -
Cmo06g01636 327 PANTHER INTERACTING FAMILY PROTEIN, PUTATIVE-RELATED 14 304 - -
Cmo06g01636 327 PANTHER KINETOCHORE-ASSOCIATED PROTEIN KNL-2 HOMOLOG 14 304 - -
Cmo06g01636 327 MobiDBLite consensus disorder prediction 198 327 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01636 - - - cmax:111470735 624.009
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00447 Cmo-Chr3:5042420 Cmo06g01636 Cmo-Chr6:11405229 4.26E-17 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1152 . . . . . . . . . . Cma06g01637 . Car06g01392 . Sed12g0651 Cpe08g00091 . Bhi01g02650 Tan10g1252 Cmetu07g1677 . Hepe05g1258 . Lcy11g1201 . . . . . . . . . . . . . . Cme07g01869 . . . . . . . Bma06g01425 . Cmo06g01636 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013545 0 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 26
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10043 PF09133 SANTA 8.20E-23 No_clan Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01636 Cmo_Chr06 FPKM 3.182948 2.86667 5.183114 5.319602 5.045891 5.610579 4.920108 12.33112 12.248523 12.463116